LOCUS JO216885 1296 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c12295_c mRNA sequence. ACCESSION JO216885 VERSION JO216885.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 1296) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 1296) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1296 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 285 a 321 c 369 g 305 t ORIGIN 1 cgggattaaa ggttccgctc ggcacctcat gtgggccagt gcggagtacc acagggtcgg 61 gtgggcgata ggttgtgggc cactgcaggt tgctgagtaa ggagtgcaag caagatgatg 121 tgaggatggt gacgacttcc gacgactgtg tcaaaaccag agatgacggt ctgcagatgg 181 ggcttccctc taagacagtt ctgaggcgaa ggcagcgagg tctgcgatga aggcagccat 241 ctgcacagat tgtcaagcat gtgctttttt cgtcatggtg cggttaggtt ggatgaggag 301 aggtgagcgc tcatgagagc atgcgcgtga aaccgtgcac atcagcgtct gctggaggaa 361 ggtgggagaa gtcaatcaac tattgtgcga cctcgtgagg ccctggtagg gagcgttcag 421 gtggcccagc aagtcgcctc gccatcccag gtcatccttg ccactgaggc ggtgcatcaa 481 grgagatgag ggaartggtc ctccgaatca gatttctctc cacstccatc ctgtttcctt 541 gggtcccygt cctttcsgtg gmaactatgc tgcatggcar crcctcagca gktccccgac 601 aagtcctctc tattgctcta cttcccatac cttgtgctcc cctatacacg gtcatgtatc 661 acggctattg ccagtcccac acaactcccc tggaggccat catgtgccca ttgccccagg 721 ctgaaacctc cagaggggtg catggctctg ggagacgtgg cctgcagatg gtggatgaga 781 agcattgctc tttcagcagt cttcagctct tcctcctatt cttgtctctt ctgctgttgg 841 ctgaggatgt ttctgttgtc tggggcctcr gcattggggc tttgcatggc tggccagtgt 901 ggggtgtcgc tgggcttctc tcttggggcg aatgcctgtg gatccgtgga cttggrccaa 961 tgctaccctc cataagctca cttgtgagtc acactgaagt ggaygcaagg ccctcmtaac 1021 cagggatgat gaagaccaca tsgatgcgat gaggaataac cgagggggtg tcatgtacaa 1081 ggggaagatg atagatactg ctgctgcctc accccacatg gagcaaaagc tcttttcccc 1141 ttcggtggat gtcactgatg ccacaagaag gtagcaacaa tgtaacaatt tgtaaaatag 1201 accacgacgt wgyaaagcgc cacaacagaa aatgaaagct ttgatgacat agaggacatt 1261 gtcactcaga caaagcctga ttctgatctc aactaa //