LOCUS       JO216885                1296 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c12295_c mRNA sequence.
ACCESSION   JO216885
VERSION     JO216885.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 1296)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 1296)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1296
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          285 a          321 c          369 g          305 t
ORIGIN      
        1 cgggattaaa ggttccgctc ggcacctcat gtgggccagt gcggagtacc acagggtcgg
       61 gtgggcgata ggttgtgggc cactgcaggt tgctgagtaa ggagtgcaag caagatgatg
      121 tgaggatggt gacgacttcc gacgactgtg tcaaaaccag agatgacggt ctgcagatgg
      181 ggcttccctc taagacagtt ctgaggcgaa ggcagcgagg tctgcgatga aggcagccat
      241 ctgcacagat tgtcaagcat gtgctttttt cgtcatggtg cggttaggtt ggatgaggag
      301 aggtgagcgc tcatgagagc atgcgcgtga aaccgtgcac atcagcgtct gctggaggaa
      361 ggtgggagaa gtcaatcaac tattgtgcga cctcgtgagg ccctggtagg gagcgttcag
      421 gtggcccagc aagtcgcctc gccatcccag gtcatccttg ccactgaggc ggtgcatcaa
      481 grgagatgag ggaartggtc ctccgaatca gatttctctc cacstccatc ctgtttcctt
      541 gggtcccygt cctttcsgtg gmaactatgc tgcatggcar crcctcagca gktccccgac
      601 aagtcctctc tattgctcta cttcccatac cttgtgctcc cctatacacg gtcatgtatc
      661 acggctattg ccagtcccac acaactcccc tggaggccat catgtgccca ttgccccagg
      721 ctgaaacctc cagaggggtg catggctctg ggagacgtgg cctgcagatg gtggatgaga
      781 agcattgctc tttcagcagt cttcagctct tcctcctatt cttgtctctt ctgctgttgg
      841 ctgaggatgt ttctgttgtc tggggcctcr gcattggggc tttgcatggc tggccagtgt
      901 ggggtgtcgc tgggcttctc tcttggggcg aatgcctgtg gatccgtgga cttggrccaa
      961 tgctaccctc cataagctca cttgtgagtc acactgaagt ggaygcaagg ccctcmtaac
     1021 cagggatgat gaagaccaca tsgatgcgat gaggaataac cgagggggtg tcatgtacaa
     1081 ggggaagatg atagatactg ctgctgcctc accccacatg gagcaaaagc tcttttcccc
     1141 ttcggtggat gtcactgatg ccacaagaag gtagcaacaa tgtaacaatt tgtaaaatag
     1201 accacgacgt wgyaaagcgc cacaacagaa aatgaaagct ttgatgacat agaggacatt
     1261 gtcactcaga caaagcctga ttctgatctc aactaa
//