LOCUS       JO216722                 571 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c11991_c mRNA sequence.
ACCESSION   JO216722
VERSION     JO216722.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          106 a          178 c          166 g          114 t
ORIGIN      
        1 agcagcacag ctgcaggcct gttagtccca tctggcgtgt cgatggcagc acctccttgg
       61 agaccacccg ccttcacaaa ggccgcggca ccttcctcca aagctatcga ctgcagcaac
      121 agactcagca gcttgtgctg ccgccacgtc agacgacgcg gctttctcca ctgctgcaac
      181 agtttctggg tttgcgggca gcaggcgcga tgcgtcagta gatcctagac acccagcagg
      241 gcacggtgga ccagaaggca tcgcagaagg agcggaatcg gctggctcga gaggagcgtc
      301 ggcgactcca gcagccctaa gcggacctgc aagcgacccc ggcgtgtcgg aagcaggcac
      361 ttgtgcctca gccgaagaag gagatgcagt ccggccggat gttccagatc tgctactctt
      421 gtctagtcct gtttgtggtg ttgacgagcg catggcagtc gccgygtcty cttcagcctc
      481 gcaggcttga ggctkctcac gcccttcaac ctgstgaacr wcgcacatat cctcytcctg
      541 gtcctcagtc gtttgcttgc gcggctgttg t
//