LOCUS       JO216512                1050 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c11686_c mRNA sequence.
ACCESSION   JO216512
VERSION     JO216512.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 1050)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          228 a          268 c          335 g          219 t
ORIGIN      
        1 tctctcatct ccatcgcccc ttacatcgcg ctcaacttct gcgccttcga cctcatcaag
       61 aagtctattc cagagaagta ccgcaagacg ccacaggcgt cgtttgtgac ggcgctgtgc
      121 gccaccacgt ttgccaccgt catgtgctac ccgctggaca cggtgcggcg gcagatgcag
      181 atgaagaact ctcccttcac ctccatcatt gacgccgtgc ctggaatcat agcgcgcgac
      241 ggcatcggtg ggctctacag gggcttcatc gccaacgcgc tgaagaactt acccaacagc
      301 agcatccgcc tcaccacgta cgacacggca aagcagctca tcatctcaag caagacagag
      361 tacgagcggc ttgtggcgga gaggacggag gaggaggcgg cggctgcggc aaagcagcag
      421 gcgcagccac ttgccctcgt gaggccttgg ggtggggggc tgccgtgttg actcgggcct
      481 ggtcaggagc agaagggggg atggaccgga ggagaaccgg gggttgctgg gggaggttga
      541 acgttccctc cctctgcata gttcggctgg ggggccagtg cgctgctgtg ttgttgggca
      601 tgggtgctgg gaagggtgaa tgttgcttgc gacgattggc ctgaaacaaa tgtgggaagt
      661 cgaggcctgt attgtactgt ggttggagag gatagggaag ggaccggcga aaacatgccc
      721 gcgcacgcag aagcggaggg gagcttgaat tcccactttg ccaaaggtgg taaggtggtg
      781 tcttggatgt ggtcccaccg tgaagtgttg ccaaacatgg accgacaaaa acacatggtg
      841 cagccaggga gggacaaacg agcagtggag tgatggactt ggagcagtcc aagaatttcc
      901 attgctgggc gaatcttttt ctcaagaagt ttctgactcc agtgatgcat ccatacaatg
      961 tagaatgtcc atttttgttt ctagacgtca ttgtgcattt ggtgcttgcg tgccacgggt
     1021 catgcacaga ccggaccaca tgtctgtaac
//