LOCUS JO216512 1050 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c11686_c mRNA sequence. ACCESSION JO216512 VERSION JO216512.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 1050) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 1050) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1050 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 228 a 268 c 335 g 219 t ORIGIN 1 tctctcatct ccatcgcccc ttacatcgcg ctcaacttct gcgccttcga cctcatcaag 61 aagtctattc cagagaagta ccgcaagacg ccacaggcgt cgtttgtgac ggcgctgtgc 121 gccaccacgt ttgccaccgt catgtgctac ccgctggaca cggtgcggcg gcagatgcag 181 atgaagaact ctcccttcac ctccatcatt gacgccgtgc ctggaatcat agcgcgcgac 241 ggcatcggtg ggctctacag gggcttcatc gccaacgcgc tgaagaactt acccaacagc 301 agcatccgcc tcaccacgta cgacacggca aagcagctca tcatctcaag caagacagag 361 tacgagcggc ttgtggcgga gaggacggag gaggaggcgg cggctgcggc aaagcagcag 421 gcgcagccac ttgccctcgt gaggccttgg ggtggggggc tgccgtgttg actcgggcct 481 ggtcaggagc agaagggggg atggaccgga ggagaaccgg gggttgctgg gggaggttga 541 acgttccctc cctctgcata gttcggctgg ggggccagtg cgctgctgtg ttgttgggca 601 tgggtgctgg gaagggtgaa tgttgcttgc gacgattggc ctgaaacaaa tgtgggaagt 661 cgaggcctgt attgtactgt ggttggagag gatagggaag ggaccggcga aaacatgccc 721 gcgcacgcag aagcggaggg gagcttgaat tcccactttg ccaaaggtgg taaggtggtg 781 tcttggatgt ggtcccaccg tgaagtgttg ccaaacatgg accgacaaaa acacatggtg 841 cagccaggga gggacaaacg agcagtggag tgatggactt ggagcagtcc aagaatttcc 901 attgctgggc gaatcttttt ctcaagaagt ttctgactcc agtgatgcat ccatacaatg 961 tagaatgtcc atttttgttt ctagacgtca ttgtgcattt ggtgcttgcg tgccacgggt 1021 catgcacaga ccggaccaca tgtctgtaac //