LOCUS JO216431 812 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c11555_c mRNA sequence. ACCESSION JO216431 VERSION JO216431.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 812) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 812) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..812 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 203 a 208 c 260 g 134 t ORIGIN 1 gggcagcaga gcagatcatg gtggcgagtg gacgacacgt catcagcagg agcagcagca 61 ggtgcaggaa gacagcagca agctgcggca gcagcttcgg cggcgagcag cagcggcggt 121 ggtggtcgta gggggtggtg agaggcagcg agcagccgaa cgcgtttgtg ccgatgaacg 181 tggcggagca agggcagtgg ttctacttgg acgtgcctgc catggcacgc gcgtgcggac 241 tcgcaccgtc ggccgacctg ccgccggtgc tgttggaggc cactgacaga ccaaggaagg 301 ctcttgtggc tgaatgggac aatgaatcag agggagcaga ggacagaagc agcagcagca 361 cgctagcgtt gacggcagca cctcaacgtg cgagcagccg atatccactt cccaaggacg 421 tgaacgattt gctgcgacag cctgtcatgc cgcaggacca cctcaattac gcgcttacct 481 ggtacacact gtttgcggcc acgtccatca tggcatacca ccgtctgaga gggaaaagga 541 cgaaacgtcc gctggccctc tcacgccgac ggtgaggccg atgtggctga ccggagtgtg 601 gaaaggacac cacaaggcag tggtgtcact atataaaggg atcacgacgt gaaaacatca 661 cgggggaaag aatttgcaag ggaaacactt gcacctgtga gccacgtggc cagatagagt 721 tagcytctat gccctcctac rtctctgaaw kcgatgtgst mtcwccttga agaccaaaaa 781 ggtattgcta agagtatgaa tctcaaacaa aa //