LOCUS JO216214 1509 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c11251_c mRNA sequence. ACCESSION JO216214 VERSION JO216214.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 1509) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 1509) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1509 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 316 a 400 c 470 g 323 t ORIGIN 1 tttgagccca acaccaagtg cttagcaaag aaagcgcagc gcatacagaa aatgctaaga 61 gcgaggagca tccctctgga ggaatgtggt ttgttggaag ctcaaacagg cagcgcaacc 121 gttgtacaca ggctgcagct gaaggaagca ttgcttgtga atggtcgaga tatttcgcct 181 ggtggacttg gaattctgcc ctgcccagaa tcagtctgat cagccatgtc aaggacaagc 241 aaatcccacc ccttccccat caagccctac cagtgggtgc ctcaccctca acttcacctt 301 ttcttctgga aagccctttt taagccgatc tctgtcgcca cagagtccgc atggctgcca 361 tgttagtgtc agatgattca aagccgaagt tgacctgtct ctggcctctg taagtgggtc 421 actcacgacc cagctgtact cagtggcctc cgagtcactg cgagcatgtg tcagagcccg 481 tcaccactac tgctgctcat gattcttgtc gctgctgatt ctgaaatcac tgctctgctg 541 ccctgttacc gaatccaagg acacagctgc ttctgctgct gttgttgccg ttgctgctgc 601 tgctgctgct tatgttgact tggggactgt agaagttgct gctgattttg cggcatatgg 661 gagcactact gctgcgactg gcgctgcagc ctccgctgct ccacagcgtt gcgcgagttg 721 cggtgagcgc agtccagcag cgtcttctcc gacgtgatga agtacgccgc aatggccgag 781 gcactgatga tgagagcctg tgcagtatgg ttgaggttgg ctttggccca cggcacagtg 841 cgacacacaa tcagagtggg aggtgtggcg atgagtgcag cccagaaagc agcctcagct 901 ccagccgcca cacttgcgtc cacgcaacgc ttagcctgcg ccttcgcttc ctcttctatg 961 cccctcattg ccgcgtccgt tgaagcggag gaagaaggag aaggagcggc agtggcggcg 1021 cacatggcag gggacgaaag cgacagcgac gatgccagtg acgccactgc cgtagcagcc 1081 agcgaccgca gggtgctgcg cccggctgct gcagctgctc ttgaggttga tgacgtcatc 1141 cttgccgtga aggtaaaggg ccaatcgttg ctgtccgagg aggcgcttga ggaaagaaga 1201 ggtgtggtgg acgaagtgga gtgacggcgc tgacgatgcc acagaaacgg atgatgcgat 1261 tgagatggca gctggtcgct gcttttgctg ctgaagagcg gagatgggag gcaggtgatt 1321 ttaaaggctc ggattgaatc ggaggccgag gctgccagac cgtgtctcgt ggacctaatg 1381 gagctgctgc ggccctcact ccaggttggt tggtgtctgg ttcgctggag taaccgcgcg 1441 cgggaggagt acggaggaat ccgccccagt gcggagaaag gacgacgaga ggagggacag 1501 cggaggcgg //