LOCUS       JO216214                1509 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c11251_c mRNA sequence.
ACCESSION   JO216214
VERSION     JO216214.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          316 a          400 c          470 g          323 t
ORIGIN      
        1 tttgagccca acaccaagtg cttagcaaag aaagcgcagc gcatacagaa aatgctaaga
       61 gcgaggagca tccctctgga ggaatgtggt ttgttggaag ctcaaacagg cagcgcaacc
      121 gttgtacaca ggctgcagct gaaggaagca ttgcttgtga atggtcgaga tatttcgcct
      181 ggtggacttg gaattctgcc ctgcccagaa tcagtctgat cagccatgtc aaggacaagc
      241 aaatcccacc ccttccccat caagccctac cagtgggtgc ctcaccctca acttcacctt
      301 ttcttctgga aagccctttt taagccgatc tctgtcgcca cagagtccgc atggctgcca
      361 tgttagtgtc agatgattca aagccgaagt tgacctgtct ctggcctctg taagtgggtc
      421 actcacgacc cagctgtact cagtggcctc cgagtcactg cgagcatgtg tcagagcccg
      481 tcaccactac tgctgctcat gattcttgtc gctgctgatt ctgaaatcac tgctctgctg
      541 ccctgttacc gaatccaagg acacagctgc ttctgctgct gttgttgccg ttgctgctgc
      601 tgctgctgct tatgttgact tggggactgt agaagttgct gctgattttg cggcatatgg
      661 gagcactact gctgcgactg gcgctgcagc ctccgctgct ccacagcgtt gcgcgagttg
      721 cggtgagcgc agtccagcag cgtcttctcc gacgtgatga agtacgccgc aatggccgag
      781 gcactgatga tgagagcctg tgcagtatgg ttgaggttgg ctttggccca cggcacagtg
      841 cgacacacaa tcagagtggg aggtgtggcg atgagtgcag cccagaaagc agcctcagct
      901 ccagccgcca cacttgcgtc cacgcaacgc ttagcctgcg ccttcgcttc ctcttctatg
      961 cccctcattg ccgcgtccgt tgaagcggag gaagaaggag aaggagcggc agtggcggcg
     1021 cacatggcag gggacgaaag cgacagcgac gatgccagtg acgccactgc cgtagcagcc
     1081 agcgaccgca gggtgctgcg cccggctgct gcagctgctc ttgaggttga tgacgtcatc
     1141 cttgccgtga aggtaaaggg ccaatcgttg ctgtccgagg aggcgcttga ggaaagaaga
     1201 ggtgtggtgg acgaagtgga gtgacggcgc tgacgatgcc acagaaacgg atgatgcgat
     1261 tgagatggca gctggtcgct gcttttgctg ctgaagagcg gagatgggag gcaggtgatt
     1321 ttaaaggctc ggattgaatc ggaggccgag gctgccagac cgtgtctcgt ggacctaatg
     1381 gagctgctgc ggccctcact ccaggttggt tggtgtctgg ttcgctggag taaccgcgcg
     1441 cgggaggagt acggaggaat ccgccccagt gcggagaaag gacgacgaga ggagggacag
     1501 cggaggcgg
//