LOCUS       JO216076                 504 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c11068_c mRNA sequence.
ACCESSION   JO216076
VERSION     JO216076.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT           89 a          160 c          118 g          137 t
ORIGIN      
        1 catccatgcg gccatcgtct ctgcccaggt ccgtgggacc cgatcggcca tcagcatcat
       61 gtttttggca tctctgccca agtctcgatc ttcctcgcca tcattgctgg agcaatcaat
      121 cgattcctct ttgtcgtcat tgtcattatc gtcgtcatca tcatcctccg cctcatccct
      181 cgaatcatcg ccgcccgaat catcatgcga aggaccggag gaggtttttc tggccatcaa
      241 gtttgagaac atggccatga tgcactgccc tggcagctac cgtgccaaag cgctgttcca
      301 tagcgcatgc ccttccactt gactcgccgg ttcagctccc gcagtgtgtg ctttctttat
      361 cgctcgagac ggcgtgggtc gccgaggcaa actccgtctt ggcgatcaat gcgactgagc
      421 gttgtatggc acaaagtgca tcgtggaggg tgcaccacgt ccttgcctga tcttctcttg
      481 taaccttcat gacctcttcc ttgc
//