LOCUS       JO215852                 718 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c10735_c mRNA sequence.
ACCESSION   JO215852
VERSION     JO215852.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          171 a          193 c          192 g          160 t
ORIGIN      
        1 caggctacac caagcccttc gctgcagaga ctgggacagt ggtctgatag agtacatcat
       61 cggcttcacc ctcaaccctc ccatcvcaac acgcctctca caaatacagt gcccagtgtt
      121 ggtggtgacg ggaaaagacg accgaatcgt gccagcgtgg aatgcgtaca gagtgtacaa
      181 agcgctcccc aatgccatgc tgtgcgagat tccagagtgc ggtcacgtgc cgcaggagga
      241 gaagccaggc gtggtggtgg acctcgtggc tgcgtttgtc aacgagcact tgctcacaca
      301 ctcgacccag tcatgaacca tcaccagcct caggcttgca ggttggcttc aggggtcgat
      361 ggacgttgtg gtgtgaagga caggagcgtg tatgcattga gctccatagc ccgatgtcct
      421 cctgtatcta tttgcacgag gcttgcggat acagctctgt acaaaaccat gccaagagac
      481 ttcatcagca agctcgtcgt ctgaccagcc atgtggtaaa gaagcagttc actgtgtgtg
      541 gcaccgtggg cgtcaagcac cactgatgtt cctgctgctc acaattttcc gactgttgtg
      601 atcagtcaca ccgtgaccta aaacagtgga ctgttgtcta tgctgcgtac catatgtgct
      661 tgtaatttca tcaccagatt gcaamccaga actgggtaag gtgtaaaagg acgcacca
//