LOCUS JO215852 718 bp mRNA linear TSA 11-JAN-2012 DEFINITION TSA: Penium margaritaceum pmar_71836_c10735_c mRNA sequence. ACCESSION JO215852 VERSION JO215852.1 DBLINK BioProject: PRJNA68813 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Penium margaritaceum ORGANISM Penium margaritaceum Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae; Zygnematophycidae; Desmidiales; Peniaceae; Penium. REFERENCE 1 (bases 1 to 718) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REFERENCE 2 (bases 1 to 718) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..718 /organism="Penium margaritaceum" /mol_type="mRNA" /strain="SKD2004_CL18" /db_xref="taxon:102169" BASE COUNT 171 a 193 c 192 g 160 t ORIGIN 1 caggctacac caagcccttc gctgcagaga ctgggacagt ggtctgatag agtacatcat 61 cggcttcacc ctcaaccctc ccatcvcaac acgcctctca caaatacagt gcccagtgtt 121 ggtggtgacg ggaaaagacg accgaatcgt gccagcgtgg aatgcgtaca gagtgtacaa 181 agcgctcccc aatgccatgc tgtgcgagat tccagagtgc ggtcacgtgc cgcaggagga 241 gaagccaggc gtggtggtgg acctcgtggc tgcgtttgtc aacgagcact tgctcacaca 301 ctcgacccag tcatgaacca tcaccagcct caggcttgca ggttggcttc aggggtcgat 361 ggacgttgtg gtgtgaagga caggagcgtg tatgcattga gctccatagc ccgatgtcct 421 cctgtatcta tttgcacgag gcttgcggat acagctctgt acaaaaccat gccaagagac 481 ttcatcagca agctcgtcgt ctgaccagcc atgtggtaaa gaagcagttc actgtgtgtg 541 gcaccgtggg cgtcaagcac cactgatgtt cctgctgctc acaattttcc gactgttgtg 601 atcagtcaca ccgtgaccta aaacagtgga ctgttgtcta tgctgcgtac catatgtgct 661 tgtaatttca tcaccagatt gcaamccaga actgggtaag gtgtaaaagg acgcacca //