LOCUS       JO215733                 622 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c10567_c mRNA sequence.
ACCESSION   JO215733
VERSION     JO215733.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 622)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 622)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..622
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          161 a          146 c          165 g          150 t
ORIGIN      
        1 tccgcctcct ccttctccac caacgcttcc ttcatttaag ccttcgctga gaccatggct
       61 ttccgcatcg tgctcatctc ggctctgatc ctcctctccg tctttgaagg cgttgacgct
      121 cacttcccga ggaagctaac tgccattgag gacagctcga gcaccaaagt ggttcggtat
      181 gccaaggacg gcaagaaggt ggagaacgct atcgaggctg gagacactta cctgtggacg
      241 gggagcatca tcaacacggt caaaaagact aagattggat cggactatgg caactgcctt
      301 tactcagcca agggttattc catctgcacc tacacaatca atctgaagag aggaagcatc
      361 acagtgactg gtacttatga agacgcaaag gcagtgcaaa ttcaatctgt tgttggtgga
      421 actgggctct atgctggggc aaagggatat gtgagggcca gggcctttgg tgacaactac
      481 aagtatgagg tcttcctcat atagagatgt tgggcatgac ctagaaactg cgatgctgag
      541 ggaatgatat tgagaaagaa gaggcgagtc tctggtgaat gatgaactct ggtggaaata
      601 aagaagggtc tttctttctc cc
//