LOCUS       JO215513                 970 bp    mRNA    linear   TSA 11-JAN-2012
DEFINITION  TSA: Penium margaritaceum pmar_71836_c10228_c mRNA sequence.
ACCESSION   JO215513
VERSION     JO215513.1
DBLINK      BioProject: PRJNA68813
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Penium margaritaceum
  ORGANISM  Penium margaritaceum
            Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
            Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE   1  (bases 1 to 970)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Broad phylogenomic sampling and the sister lineage of land plants
  JOURNAL   PLoS ONE 7 (1), E29696 (2012)
   PUBMED   22253761
REFERENCE   2  (bases 1 to 970)
  AUTHORS   Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JUL-2011) Cell Biology and Molecular Genetics,
            University of Maryland, Bioscience Research Building, College Park,
            MD 20947, USA
COMMENT     Two-step clustering process: First, trimmed 454 reads were
            clustered with MIRA v.2.9.43 using 454 EST assembly specific
            parameters. Second, the raw Sanger reads were combined with the 454
            contigs + singleons (with quality scores) and were cleaned then
            clustered with CAP3 (100 bp plus 95 percent identity overlap).
            
            ##Assembly-Data-START##
            Assembly Method       :: MIRA v. 2.9.43; CAP3
            Sequencing Technology :: 454 GS FLX Titanium; Sanger
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Penium margaritaceum"
                     /mol_type="mRNA"
                     /strain="SKD2004_CL18"
                     /db_xref="taxon:102169"
BASE COUNT          180 a          342 c          203 g          244 t
ORIGIN      
        1 cttttgttaa gcttacttaa tcatgtacnc tagaaaaaaa tacagaaaga gccatgcttt
       61 acggttccga aaagaagaga atattctgca cactctcctt atttgccaga aaagtcttca
      121 gcacgtcggt tatcgagaga ggagaagccc tccgtgcgat gcaccacgcc tgcaggtgct
      181 ctgcttcctc ccccgtgctt ctcccatgcc agtagcgctg ccgtctcctc acgctcctcc
      241 tcctcccctt cctccttcct cccctcttcc tcctccccct cctcattcac ctttccagcc
      301 ttctcttcct catcagcatc aacggtatct ttcaacagcc aggccgcttc cctctcctgc
      361 ttctggcatg gtgcccacac gtccgacatc tcctcctcct tgtcctcctc gtcggccttg
      421 tccttctcct catcctcctc caccacgctc ctccactcct ccgcttccct gctgtctgta
      481 agggccttga ggtacaagtc gccggcgagc ttggcactca gtttggcatg gagcttggag
      541 tcgatcgcgg agtaaagatt gtggtccttg ttggcgagca agtagactgc caacatcacc
      601 cgctgcacta ggagtccatt ctcatccttt ttgaagaaag ggcggaacga ttccgtcgta
      661 aacacaaact ccgacccccc ctccttgtgc acggccgggc ggtcaaagtg gcccgatgga
      721 aaatgttttg tgcgcattgt ctgcgcgtcg tagccttcgc tgtagcccga tagccattgc
      781 agcatttcct ggcaccgcgt aaacctttac gcctaggtcg accttcctgg caccgcgtaa
      841 acccgtgcgc taggtcgcca tacctggcac cgcgtaaacc cgtacgctag gtcgccacac
      901 ttgcgcttgc actccaccac ggccaccacc ctccaccact ttgaaacgcc gaggcttcat
      961 ttggccatgg
//