LOCUS JO202204 458 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Chlorokybus atmophyticus strain UTEX 2591 chatm_c13299_c_s mRNA sequence. ACCESSION JO202204 VERSION JO202204.1 DBLINK BioProject: PRJNA51157 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Chlorokybus atmophyticus ORGANISM Chlorokybus atmophyticus Eukaryota; Viridiplantae; Streptophyta; Chlorokybophyceae; Chlorokybales; Chlorokybaceae; Chlorokybus. REFERENCE 1 (bases 1 to 458) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 458) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..458 /organism="Chlorokybus atmophyticus" /mol_type="mRNA" /strain="UTEX 2591" /culture_collection="UTEX:2591" /db_xref="taxon:3144" BASE COUNT 93 a 133 c 158 g 74 t ORIGIN 1 tcgcacgcca gtgaagggag ggatcaggat ggcggatagc gtggatgcgg atgagacaat 61 ggcgctggcg gcgctgatga cgttcaagtg cgccgtcgtg gacgtcccat ttggcggagc 121 caaaggcggc atcaagatcg accgtcggat gtattctgag cgtgagcgag agcagattgt 181 tcggcgctac accacagagc tcgcccgaca tggcttcggc aacgtcggac gccactcagc 241 caagtttctg gccgatgatg gtgcgcgcat catcgcgatc gtcgagtacg acggcgcgat 301 ttgcgacgag acgggtcgcg gtctggacat cgaggcggtg gcgcttcacc agatgaagac 361 gggcagcata aagaactacc cgcacgcgcg cacggtgcca cgcgaggccg ccatggaggt 421 cctcgaacac gcctgcgaca tcctcgtcgc ccgccgcg //