LOCUS JO201788 533 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Chlorokybus atmophyticus strain UTEX 2591 chatm_c12295_c_s mRNA sequence. ACCESSION JO201788 VERSION JO201788.1 DBLINK BioProject: PRJNA51157 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Chlorokybus atmophyticus ORGANISM Chlorokybus atmophyticus Eukaryota; Viridiplantae; Streptophyta; Chlorokybophyceae; Chlorokybales; Chlorokybaceae; Chlorokybus. REFERENCE 1 (bases 1 to 533) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 533) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..533 /organism="Chlorokybus atmophyticus" /mol_type="mRNA" /strain="UTEX 2591" /culture_collection="UTEX:2591" /db_xref="taxon:3144" BASE COUNT 156 a 125 c 136 g 116 t ORIGIN 1 tgcgtgcacc gcacgtttct gaaaagcgtc tactgcgatg gaaaatccaa caccatcgta 61 ctcaaagttg ctaaagacgc gaccaaagca gaaatcaaag ctgctgtgca gaaactgttt 121 gaagtcgaag tcgaagtcgt taacaccctg gtagttaaag ggaaagttaa acgtcacgga 181 cagcgtatcg gtcgtcgtag cgactggaaa aagcttacgt caccctgaaa gaaggccaga 241 atctggactt cgttggcggc gctgagtaag tcggaggagt aatacaatgg cagttgttaa 301 atgtaaaccg acatctccgg gtcgtcgcca cgtagttaaa gtggttaacc ctgagctgca 361 caagggcaaa ccttttgctc cgttgctgga aaaaaacagc aaatccggtg gtcgtaacaa 421 caatggccgt atcaccactc gtcatatcgg tggtggccac aagcaggctt accgtattgt 481 tgacttcaaa cgcaaccaaa gacggtatcc ccggcagttg ttgaacgtct tga //