LOCUS JO201631 591 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Chlorokybus atmophyticus strain UTEX 2591 chatm_c11991_c_s mRNA sequence. ACCESSION JO201631 VERSION JO201631.1 DBLINK BioProject: PRJNA51157 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Chlorokybus atmophyticus ORGANISM Chlorokybus atmophyticus Eukaryota; Viridiplantae; Streptophyta; Chlorokybophyceae; Chlorokybales; Chlorokybaceae; Chlorokybus. REFERENCE 1 (bases 1 to 591) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 591) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..591 /organism="Chlorokybus atmophyticus" /mol_type="mRNA" /strain="UTEX 2591" /culture_collection="UTEX:2591" /db_xref="taxon:3144" BASE COUNT 140 a 141 c 178 g 131 t ORIGIN 1 ggatccacct caagcatggc gggcgcatgc agttgggact tttcctcaag ggcattggac 61 tcagtctaga ggacgccatt tctttctggc gggaggagtt tacaaagaag gtaycgggat 121 cgagaagttt cagaaggagt acatgtacgg catccggcat aattatggca aagagggcaa 181 gcgcgcggac tatacaccct acacatgcat gaagatcatc aacgcagcgc ctgcggctgg 241 cgatcaccat ggatgtccat atcgtcattt cagtgcggac aacctgcgag ctgcattgcg 301 aagcatgcgg ctctctgctg gtgtcgttga tgatgtgatg gacaaggcca agaatcacca 361 ctatcagttg gcttgcgcaa gcgcgtttga gggcatgcat aattgcgagt gcgaaacagg 421 catcaaccat cccaatcagt attttgaaga aagccgaaaa ggttttggca ctggtggagg 481 ctgctcaagc gttgccggaa gctcccgcgg ctgccgccct cacgggttct gctggtgctg 541 agacgcaagc ggcctagtgc gtgtatgtgt acttgtagcg tgcaggttga a //