LOCUS JO201514 796 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Chlorokybus atmophyticus strain UTEX 2591 chatm_c11788_c_s mRNA sequence. ACCESSION JO201514 VERSION JO201514.1 DBLINK BioProject: PRJNA51157 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Chlorokybus atmophyticus ORGANISM Chlorokybus atmophyticus Eukaryota; Viridiplantae; Streptophyta; Chlorokybophyceae; Chlorokybales; Chlorokybaceae; Chlorokybus. REFERENCE 1 (bases 1 to 796) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 796) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..796 /organism="Chlorokybus atmophyticus" /mol_type="mRNA" /strain="UTEX 2591" /culture_collection="UTEX:2591" /db_xref="taxon:3144" BASE COUNT 191 a 210 c 214 g 181 t ORIGIN 1 aattcccggg atgacaacca gatgctgcgt gcccggatgg agtctgcgac attgtcacca 61 tacaaggtcc cgatgcccag tggggatggc accgatgtga tcaagattga cccttacctg 121 gagccttaca agggtcactt gcaataccgt tacagcaagt ttaaggaacg gttcgctgaa 181 attgataagt atgagggtgg tttggagaag ttctcaaggg gttatgagaa gttcggattc 241 actttgtctc gtgatggcat cacataccga gagtgggccc ctgcagccca gaaggcttcc 301 ctgattggcg acttcaataa ctgggaccag aatgctgacc ccatgaccaa gaatccctat 361 ggcgtgtttg agctcaacct gcccaacaat gcagacggca ctcctgccat ccctcacggg 421 tcgaaggtca agattcgcat gctatccgag tccggagagt ggattgaccg cattcccgcg 481 tggatcaagt atgccgttca gcctgaaggt caagttctgt atgatggtgt gtactgggat 541 gcacctgaga agtacgagtt caagcacccc aggccaccga agcctcgcac tctgcgcatc 601 tatgaggcac atgttggcat gtcgtctgtg gagcccaaga tcagcacata cgccgagttc 661 cgagacaccg tgctgccgcg catcaaggac ctgggctaca acgctgtgca actcatggcc 721 gtcatggaac acgcgtacta tggctcattc ggttaccaca tcacaaactt tttcgctgta 781 tcttcaaggt gtggaa //