LOCUS JO201110 536 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Chlorokybus atmophyticus strain UTEX 2591 chatm_c11068_c_s mRNA sequence. ACCESSION JO201110 VERSION JO201110.1 DBLINK BioProject: PRJNA51157 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Chlorokybus atmophyticus ORGANISM Chlorokybus atmophyticus Eukaryota; Viridiplantae; Streptophyta; Chlorokybophyceae; Chlorokybales; Chlorokybaceae; Chlorokybus. REFERENCE 1 (bases 1 to 536) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 536) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..536 /organism="Chlorokybus atmophyticus" /mol_type="mRNA" /strain="UTEX 2591" /culture_collection="UTEX:2591" /db_xref="taxon:3144" BASE COUNT 118 a 143 c 163 g 112 t ORIGIN 1 gggcaaggtc caactgttgc cagatgcggc catgccagag cgcttctact gcaggcaacc 61 acaaatagtg cactcggtgg tgctgccatg gctggtcgat gttgctggag acaacgtgga 121 gtctgatgat gatgatgatg aagcacccga cttgtcgccg cccagcgtgg agtgtctgtt 181 ctcttctcaa agcagtgaga ggttactgac gggtgcggcg gtcgttccaa gcccccttgc 241 agacgagcgc ttggtgtgcc tcacagccag ctctgagcta gtcgccttgg agccgagtgt 301 tgtcgagagc agtgacttgt tgcatgccga tcagaacacg agcgatgctg aacagatggc 361 tgctgcacac caagaggcac tccgcagaga gctgttgaga ggccctcctt ctatgaaact 421 gccacctatg cctccaggga acgaggtgca ggatatgcgc acgcttgagg gtcgcaagca 481 cctgcacgag tgttcaaagc tcctaaggga gaagtacgtc cagcatctgt atcaca //