LOCUS JO200933 476 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Chlorokybus atmophyticus strain UTEX 2591 chatm_c10735_c_s mRNA sequence. ACCESSION JO200933 VERSION JO200933.1 DBLINK BioProject: PRJNA51157 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Chlorokybus atmophyticus ORGANISM Chlorokybus atmophyticus Eukaryota; Viridiplantae; Streptophyta; Chlorokybophyceae; Chlorokybales; Chlorokybaceae; Chlorokybus. REFERENCE 1 (bases 1 to 476) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 476) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..476 /organism="Chlorokybus atmophyticus" /mol_type="mRNA" /strain="UTEX 2591" /culture_collection="UTEX:2591" /db_xref="taxon:3144" BASE COUNT 102 a 154 c 127 g 93 t ORIGIN 1 tggaactgcg ccgacatctc catcgggttc cccaccaagt ccccgacgcc cgcacccggc 61 cacggctgct tctatcataa cagcaattcc aaagtctgcg agcgcaactc caaagcctgc 121 ggctggacgc ctatttacaa caccaggagg tcttgctgca agtctgtcgg cgggtgcagc 181 ccgacgccct caccctctcc tcccgccagc aagggctgct accgcgccac ggcgtggtac 241 cccgtgcgcg agtgcggcta cgacgccaag gcctgtaact ggttcaacaa cgtgtgggcc 301 accaaggcag agtgctgcaa gcctggcaat ggacatcctc agggctgcgg tcgcgccgac 361 taaggagcaa catggtatga agcgagagtt cagtttccgc ctatttttgt tttcaaggca 421 atcaggcaac tacctttcac ttgaaaggtg ctatacatag ttgtgtgcag cgcaac //