LOCUS JO200769 444 bp mRNA linear TSA 23-FEB-2012 DEFINITION TSA: Chlorokybus atmophyticus strain UTEX 2591 chatm_c10416_c_s mRNA sequence. ACCESSION JO200769 VERSION JO200769.1 DBLINK BioProject: PRJNA51157 KEYWORDS TSA; Transcriptome Shotgun Assembly. SOURCE Chlorokybus atmophyticus ORGANISM Chlorokybus atmophyticus Eukaryota; Viridiplantae; Streptophyta; Chlorokybophyceae; Chlorokybales; Chlorokybaceae; Chlorokybus. REFERENCE 1 (bases 1 to 444) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Broad phylogenomic sampling and the sister lineage of land plants JOURNAL PLoS ONE 7 (1), E29696 (2012) PUBMED 22253761 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 444) AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F. TITLE Direct Submission JOURNAL Submitted (12-JUL-2011) Cell Biology and Molecular Genetics, University of Maryland, Bioscience Research Building, College Park, MD 20947, USA COMMENT Two-step clustering process: First, trimmed 454 reads were clustered with MIRA v.2.9.43 using 454 EST assembly specific parameters. Second, the raw Sanger reads were combined with the 454 contigs + singleons (with quality scores) and were cleaned then clustered with CAP3 (100 bp plus 95 percent identity overlap). ##Assembly-Data-START## Assembly Method :: MIRA v. 2.9.43; CAP3 Sequencing Technology :: 454 GS FLX Titanium; Sanger ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..444 /organism="Chlorokybus atmophyticus" /mol_type="mRNA" /strain="UTEX 2591" /culture_collection="UTEX:2591" /db_xref="taxon:3144" BASE COUNT 76 a 147 c 117 g 104 t ORIGIN 1 cagccttggc tgctcgcttg gggtttaggc tgcaattgaa tcatggcatt gtcgactgac 61 agccctcgta ttaactttgc aaccgtgttc atcttgatcg gactcatcgg catgctccgc 121 ttcgtcaacg tctcaatctt ctcaacctct tcggtgggtt tttcgggggt ctaggaggcg 181 gcggtgtctg cagcaaaggt gaccgcacgg gccggaagcg gcattttgcg gtgctaacaa 241 cactcgcgtg aacagcgttc tgtgcacaag ctcctgtgta ggcctccaat gttggcagga 301 gccaaaccct agccctactc tataaatccc tcttgtagcc tcccaagacg atgccgccgc 361 agacgtgctc accgctctgc tgctgaccag caccgccctg gtcgctcccg ccgccgccgc 421 cgccgccgcc ttgcgcagca tccc //