LOCUS HO644542 1509 bp mRNA linear EST 19-JAN-2012
DEFINITION penium_71836_c11251_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO644542
VERSION HO644542.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 1509)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1509
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 316 a 400 c 470 g 323 t
ORIGIN
1 tttgagccca acaccaagtg cttagcaaag aaagcgcagc gcatacagaa aatgctaaga
61 gcgaggagca tccctctgga ggaatgtggt ttgttggaag ctcaaacagg cagcgcaacc
121 gttgtacaca ggctgcagct gaaggaagca ttgcttgtga atggtcgaga tatttcgcct
181 ggtggacttg gaattctgcc ctgcccagaa tcagtctgat cagccatgtc aaggacaagc
241 aaatcccacc ccttccccat caagccctac cagtgggtgc ctcaccctca acttcacctt
301 ttcttctgga aagccctttt taagccgatc tctgtcgcca cagagtccgc atggctgcca
361 tgttagtgtc agatgattca aagccgaagt tgacctgtct ctggcctctg taagtgggtc
421 actcacgacc cagctgtact cagtggcctc cgagtcactg cgagcatgtg tcagagcccg
481 tcaccactac tgctgctcat gattcttgtc gctgctgatt ctgaaatcac tgctctgctg
541 ccctgttacc gaatccaagg acacagctgc ttctgctgct gttgttgccg ttgctgctgc
601 tgctgctgct tatgttgact tggggactgt agaagttgct gctgattttg cggcatatgg
661 gagcactact gctgcgactg gcgctgcagc ctccgctgct ccacagcgtt gcgcgagttg
721 cggtgagcgc agtccagcag cgtcttctcc gacgtgatga agtacgccgc aatggccgag
781 gcactgatga tgagagcctg tgcagtatgg ttgaggttgg ctttggccca cggcacagtg
841 cgacacacaa tcagagtggg aggtgtggcg atgagtgcag cccagaaagc agcctcagct
901 ccagccgcca cacttgcgtc cacgcaacgc ttagcctgcg ccttcgcttc ctcttctatg
961 cccctcattg ccgcgtccgt tgaagcggag gaagaaggag aaggagcggc agtggcggcg
1021 cacatggcag gggacgaaag cgacagcgac gatgccagtg acgccactgc cgtagcagcc
1081 agcgaccgca gggtgctgcg cccggctgct gcagctgctc ttgaggttga tgacgtcatc
1141 cttgccgtga aggtaaaggg ccaatcgttg ctgtccgagg aggcgcttga ggaaagaaga
1201 ggtgtggtgg acgaagtgga gtgacggcgc tgacgatgcc acagaaacgg atgatgcgat
1261 tgagatggca gctggtcgct gcttttgctg ctgaagagcg gagatgggag gcaggtgatt
1321 ttaaaggctc ggattgaatc ggaggccgag gctgccagac cgtgtctcgt ggacctaatg
1381 gagctgctgc ggccctcact ccaggttggt tggtgtctgg ttcgctggag taaccgcgcg
1441 cgggaggagt acggaggaat ccgccccagt gcggagaaag gacgacgaga ggagggacag
1501 cggaggcgg
//