LOCUS HO636060 1215 bp mRNA linear EST 19-JAN-2012
DEFINITION penium_71836_c33066_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO636060
VERSION HO636060.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 1215)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1215
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 283 a 346 c 302 g 279 t
ORIGIN
1 agattgtact cattccaatt accagactcg tagagcccag tattgttatt tattgtcact
61 acctccctgt atcaggattg ggtaattttg cgcgcctgct gccttcyttg gatgtggtag
121 ccgtttctca ggctccctct ccggaatcga accctaattc tccgtcaccc gttaccacca
181 tggtaggcct ctatcctacc atcgaaagtt gatagggcag aaatttgaat gaaacatcgc
241 cggcgcaagg ccatgcgatt cgtggagtta ttatgaatca ccgcaatgcc gagcaagctc
301 ggattggcct tttatctaat aaatgcgtcc cttccaagag tcgggagttg gtgcacgtat
361 tagctctaga attactacgg ttatccgagt agtaggtacc atcaaataaa ctataactga
421 tttaatgagc cattcgcagt ttcacagtat aaaagcgttt atacttagac atgcatggct
481 taatctttga gacaagcata tgactactgg caggatcaac caggtagctc tttacgggag
541 caggcaccgc gtacctgtgc gaccttgtga gtcgtgcaag tgacgcgggc ctgacccggc
601 cgctcctccc ctgaaggaag gacggatggc tttcaaggtt ccaggcatca acgaagcgag
661 caagagcacg ctacgtgagc cgagggcttg ctcctcgctc cctgcaccac gtgtggtttg
721 gaggcgatcc gctgcacccg ctgagattct ttccggaccg cacacgttat caaggaatcg
781 ctcgaggtgc accaaagaat ggcacacgac aaggccttgc gcgtacagac gtccgtcgcg
841 cactccctcg gtagagcgca ttgccacgga tgtggaatgc atcccccccg atagatgtgc
901 aacgtgttag gttacccaat acgcaatgcg tagcaacaca agatccctct ctccatcccg
961 agccaaagag cccggaggcg gtgcagagca gggcgtttct cggtggagcc aataatggcc
1021 cgtccaaaaa acatcccgca tagctcccgc tctcattgag atcggcttgg gccatgcaac
1081 actttctgcg tacacgtccc gtgctgatgg ggccaaaccg agctacctct catcgttgcc
1141 aaggccagat tcggctccgc ttggatcccc ttggggaacc acgctccgca cgactgaccc
1201 cgatcaccgg samyk
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