LOCUS HO619936 1047 bp mRNA linear EST 19-JAN-2012
DEFINITION penium_71836_c13299_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO619936
VERSION HO619936.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 1047)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1047
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 205 a 267 c 270 g 301 t
ORIGIN
1 ggtccatgac actctttagg ctgttcaggc ctcagttgtc ttctgctttc gcataattca
61 gtatttgcag cttttgacac ttgtgcttat gatgctagct aacccgtcgt tgttcttacc
121 tccacctgtg tgtgttaatg aattagctgg ccagcttgta ctgttgtgtc agcgacaaca
181 gtgctaggaa gctattcttc atgttatcag agcaacgagc tagtgctcgc atagatgcgt
241 agcagaggca tagcaatcgt aatcgcgttc agtgaccgca gttgttgcct tgagtagcag
301 cagtagcaac gccccctatc tcagtgagag gtcctgcgag gacacaccac cgttctgacc
361 attttttgaa gaaatccgtg acgtttctgc agccattccg cggcagcagc agccgctttg
421 tgttggttct tgcacatctc tcattgtgct ctgttgtgtc ctccckgctt gtgtacatcr
481 gcgtgcagat gactgacggc gagactcgac gctgmtrgag tgtcgtccgt tggagccaac
541 gcacgctgag gcctaatcgc agtttgttgg agcctcctcc ctcaagcgac gtgctcagct
601 ccatcggcgg gcctcctcag cggtcgggcc gccggcggtc acagccactg cagatgctgt
661 gtgcatgctg gatctgattg tactattgcg tctgtagtgt cgtgctctgc ttagggtccg
721 agtctcatgt attttcacta ggaactagtg taggcactgc ctgggtttcg gcagccataa
781 ctctgtactg ctatttttct agctgattct aaccaaacga ctacgttcgt agcatcggta
841 ttaaggtatg gtgcagtttt caggcaaacg gacgacgcct gggtcttggg ttgtccgctg
901 tctggcacgg ctcatcgaca aaaccctgtc tgcaagaaaa gaggtctttt tcttgattga
961 ctggttagcc gagtaacaat cactacaaag ctggagagga gctaaacact tggaggggtc
1021 tcccattgtt gctcattctt cattcct
//