LOCUS HO599591 2258 bp mRNA linear EST 20-JAN-2012
DEFINITION penium_71836_c12546_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO599591
VERSION HO599591.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 2258)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..2258
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 465 a 701 c 647 g 442 t
ORIGIN
1 kagagagaga gatattcata tagcaaatgg caaagacgtg ggaaggggca gagaaaggta
61 tgcttctaat gaaggaaagc acccgctatg aatactacca gtcacttgcc tgtacacgac
121 attccaggcg ccatggggaa aatctggaat gctgcatgac agacattgtt ctaggaaaga
181 gtggtatgca aaaaagaaac tggatgcagt ggactatcaa cactgccgtc tgtaaagtgc
241 agtgatctaa cacctctgct cgaggcactt ctcgtgctca tggcctcttt acgcgcgcag
301 tcttagagat gctcgagttg atgacaccag actgcagcgc ctcagacctc atctcagcca
361 ggaagtggct cgtagcagct cctaccccag agaaaaggtg gctcggaagc tgcaggaggt
421 actcctgctg ccactgcctg gcgctcaaga gcatgaaacc agtacccttg cctgccaggc
481 ttctgccaca gcatatcctc tcagagccct gcaaggctga gagcagcctg ccgcagccgc
541 agcatgttgt acggatccgc cctggtggca tccttgctaa cgccaggggc tggcgtggaa
601 ggcagcatgg tccaccaact gctgtctaac acaaactgaa acgacgatga cacgcgccga
661 aacagatctt gcccaaaccc tagctgctcc tcctgcgatg aggcaacgtg caactgrggc
721 aactgctggc ccttctggac ctggaagcgt tggtcgtgat gttggcattg ctcccgggct
781 tgccgctggc cttccacctg catttctgac tctgcgctga caaccccctg ccggcaggtt
841 gcgttttcag cgtcacaggc ctgcaccaat ccatcctctc cacttcctgc gtgggtactg
901 ctcccagagc ttgcatcgct gctccgcgta catctcgtgg cggcgttaac cgcgcaccga
961 ctgtcgccgc atcgcacgca atgcggaggg gtagccgctc ctgctgctga gcccccgcct
1021 cgaagccgcc agaaagggcc tgctgctcct cctcctcctc cccaagaaaa agtgggcaac
1081 ggcggcaacg ccgtcgcttc tcccgccgcc tgtcctgtgg atttcaggtt ccctgttgtt
1141 cccgatacat tcggccagag gccgaggcca ttaatggcgt cggcaatcag aggcgacagc
1201 aagggctgac gcgcagccac ccatggggtc cctaaggacc tcgtccatca acggccggag
1261 atgcggctcg aagctgagca tccgacgaat gagatccttt gctgcaggtg aaattgtttt
1321 ccagatgggc tttacgaagt tagcctccgc attgaaggat cgccttaggc cgcggcggaa
1381 aatcggccag ctggagctca gcatggagta gaggacccac ggccccagag accacacgtc
1441 agcagaaagg ccgtatgtat cgccaaggag gacttcgggc gcaacgtatg gctggctgcc
1501 tgccaaaccg ctcgcctttt gtccttttgc aaggacgact gcaagcccga aatcaccmaa
1561 gccgcacctc gacggaacta gcgggaccgt tccccccgtt gctgctgccg ctattcgtgc
1621 tgcactttac accgccgctg ttgctctcgc cgttgctgcc ttcgctgctg ctcccgctgc
1681 tcatgagaaa gacgttttct ggcttgacgt ctctgtgaat gacgccgcgc tcgtggcagt
1741 ggctcagagc ggacgccaac tggcggaaga tggtgcgcgc ctcatcctcg ccgaggccgc
1801 ccgtaccgcg cacgcgggac agcaacgagc cgccgtcgca ctgctccatg aggatgtacg
1861 ccgcctcctc atcgcggtaa aggccctgaa gcgcaacgac gttggggtgg ccctgtgccc
1921 tctggagagc gtcgatctca acggctgcgg tttccgctcg ttcgtacggg aggaggtcga
1981 cgcgcttgca agcgaagagg cggcccgtgg agcgctcctg gtaagtggag acctggccgt
2041 accgtccgtc gcccagacgc gagacgaact gaaagtcccg cgtaaggtcg tccgtggaca
2101 atgcgttgtc caggaccttc gtcgacactg ggtttagtgt catggccggg gcggccatgg
2161 ttacccgtac agggcgtgcc agacagttcg acctcagaac gttgacagtc actggagacg
2221 tcgcaccccc caacgcaccg ctatgataca gatcagct
//