LOCUS HO597266 1190 bp mRNA linear EST 19-JAN-2012
DEFINITION penium_71836_c10416_c Penium margaritaceum EST library Penium
margaritaceum cDNA 5', mRNA sequence.
ACCESSION HO597266
VERSION HO597266.1
DBLINK BioSample: SAMN00169693
KEYWORDS EST.
SOURCE Penium margaritaceum
ORGANISM Penium margaritaceum
Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae;
Zygnematophycidae; Desmidiales; Peniaceae; Penium.
REFERENCE 1 (bases 1 to 1190)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1190
/organism="Penium margaritaceum"
/mol_type="mRNA"
/strain="SKD-2004, CL-18"
/db_xref="taxon:102169"
/clone_lib="SAMN00169693 Penium margaritaceum EST library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 285 a 320 c 334 g 244 t
ORIGIN
1 tattcccttg tctggctttg ctttcctcct ctgccctatg ttcaagtcaa cgaagggaaa
61 gctaggtgtg ccacatccca tcatgatcac agcagggtga ccttcacata ccatggccac
121 tgcaagtgct caccacatga cctgtgcagc atcatcctgt ggagaccaat atgaggmact
181 gggaaatgag agcccccctg gcccttccca aactgaacac caaccaaccg tgcgccaacc
241 gcaccktccc tgcsacactg gcaacttgtc cagcatccag aggacaaagt cttgtttcgc
301 cgcaacatcc acctgctctc gacaccacat gcagcgtggg ggcccaacgc tatgaaacct
361 ctccactgag tcgagttgag tgcccataca tagactagtt ggtcatggct gccttggtcc
421 gacatctggt tccaaccttc gccctggagg cagtggtctg gctcccacaa catgacagat
481 gggcggcatt cgtcctgaga gaggttggca gaagggtgtg agagcctgcc ctccctccca
541 cccatcmgct cagtgtggga agagggaagt gggaaggaaa aggcaaggtg tggaggtggt
601 ctgaagtgag gaggcaggag ggagggtttt gaagaagacc agtacaaggt tgcaggggca
661 agatacggag gaggtgaaga tgtggtcgag gaggtaggca agtgtagagg aaaggtaaga
721 cgaagagagt ctcggggaaa gctcyactct atcgctccat gcatggaaca gagaccaact
781 gctgcagtgc atggttcaat gatgctccat cttcagactc cacctgcgct catactcatc
841 taccaacaag gttgcagctg cacccaaaat agcagcgacc gtcagtttcg accaatgcat
901 gatgtcagtg attctgcatg ctgatgtcac aagatgggtg taagtagcct catgacttgg
961 gtgcagacgc tgcagcagat ggcgaagatg aggatgagga tgaggatgag gatgacgagg
1021 aagaccccac aggcatcttc atcgacatgc cgcgcttctt ctcgtcgcat agtttcccaa
1081 tggaccttga tgggggtttc mccgagccgt atcccccacc gtgccgttcg gcgtccagyg
1141 tgaactttcc gccagggatg tcgggcagcc ccttcttcag cagcagaccg
//