LOCUS HO546390 1223 bp mRNA linear EST 19-JAN-2012
DEFINITION nitella_74953_c11068_c Nitella hyalina EST library Nitella hyalina
cDNA 5', mRNA sequence.
ACCESSION HO546390
VERSION HO546390.1
DBLINK BioSample: SAMN00169692
KEYWORDS EST.
SOURCE Nitella hyalina
ORGANISM Nitella hyalina
Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
Characeae; Nitella.
REFERENCE 1 (bases 1 to 1223)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1223
/organism="Nitella hyalina"
/mol_type="mRNA"
/strain="KGK0190"
/db_xref="taxon:181804"
/clone_lib="SAMN00169692 Nitella hyalina EST library"
/dev_stage="all stages"
/note="Culture harvested from various time points during
the day and across the life cycle."
BASE COUNT 391 a 287 c 248 g 297 t
ORIGIN
1 caaaagaaac agagttataa cttcctataa gttgattaat aagcataaat ataagactta
61 ttgaaattcc aaaatggata atattgcata tactggacaa cgatggctat acgtcattac
121 cactatcact gccatgtttt gctaatcagc aatgctctca gaattagaca ctcatacatg
181 gttccatgtg tgttgtacgt tggcatcagc cattgctctg cgtacaaaac tcatctccag
241 attctccact gagatgatca gcatcacatt atgcacacat gccacgtggc atgtactaca
301 tgctcaactg catgatgaca ctaattaagc cagtgcaaga gtaagacata aacaggagcg
361 gcaaggatgc tttgcacgct tagctcagtg atagtaatga ccatctgttt gcatttcgat
421 catgcctgat agatgacatc agctttgccg gaaatcattt tccccatatc aagcatagaa
481 ccccgacgag tgagagaaag ccaagtggca ttaatgctga cacacatcca tcgcccctct
541 atttaatctg gtgacctttc gtgattgaat gaactgtccc tacaatggcg tatgggtagc
601 atgtgcatgg aaaaacttga tccagatgag catgtccagt gtttacccac ccaagcaaac
661 aagctaacta aggaaaatgg cctgcaacaa gtatattcaa tagattgaaa aaggagaaaa
721 acgatctttc agataaggag aagagacgaa tgaagaaatg gagcaacgat cagtccagtc
781 tggttcagtt tacagtcaga ggcttcttag catgtttctc taccacaagg tcaacgagca
841 gtatgcgtct cttcaatgaa cgttccctgt tcccaccctc ttccattaga cctggttcat
901 ccagagtaga cctggaaaga accaggtcaa acatctctac gacgctgtgg aacacagtag
961 acctggaaag aaccaagtct aacgcctgta tgacgctgtg gaacacatta aacctggagc
1021 gaaccaggtc taatgtctat accacactgt ggagcacatt agacccggaa cgaaccaggt
1081 ctaatgtcta taccacactg tggagcacat tagacctgga aggaaccatg cctaatatct
1141 ataccgcact gttgaacaca ttagacccgg accgaaccag gcctaatgtc gctacgacaa
1201 tgtggaacac attagacccg gaa
//