LOCUS HO515940 1426 bp mRNA linear EST 19-JAN-2012
DEFINITION nitella_74953_c11665_c Nitella hyalina EST library Nitella hyalina
cDNA 5', mRNA sequence.
ACCESSION HO515940
VERSION HO515940.1
DBLINK BioSample: SAMN00169692
KEYWORDS EST.
SOURCE Nitella hyalina
ORGANISM Nitella hyalina
Eukaryota; Viridiplantae; Streptophyta; Charophyceae; Charales;
Characeae; Nitella.
REFERENCE 1 (bases 1 to 1426)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1426
/organism="Nitella hyalina"
/mol_type="mRNA"
/strain="KGK0190"
/db_xref="taxon:181804"
/clone_lib="SAMN00169692 Nitella hyalina EST library"
/dev_stage="all stages"
/note="Culture harvested from various time points during
the day and across the life cycle."
BASE COUNT 382 a 410 c 248 g 380 t
ORIGIN
1 taaagtcgaa attatatccc atcgcgttga tcttgctgtg ccattgcact cccacatata
61 cactttcctg ctcgacgtgg agtaacagtt atataacact tccgtcttca cgcaaaacac
121 ctcccattta gaaatcccca tatacttcta tttcacgtta acacatctcc tctgccacta
181 agggcatact cagactagtg tttttctgct agcattcaca atgaatgtgg gatagattcc
241 agaccaaata cattgcagaa tctgctcggg aaagccaagt gtgagtatgc tctaagctgc
301 acaccatctc ccattggctc acattgcctc cttgttgtat gttagcacca ctgttccagc
361 atgcagctgt atatcgcaaa cacaacgtcc cagatcaact caaacactcc ttgcataaga
421 aaagagcaac cccgtcacct cattcagcaa cagcaattct gatccaaacc caggctgacg
481 ggtctcgcat cttctgacag tctcctgatt gatttcctga tactgtctct gcacatgggt
541 gcttgagagt gattaagcag agatgtgact gggctgcagt gacgtccctc ctgatgcccc
601 accctgccac tcactcgaaa ttagacattt acttccagct gctaacatcc ggacaagatt
661 gcagtcatcg ggatgttgac aactgattgc agatcaacgt cgatgaaact cttgtcgtgg
721 acaacttaat atcgcaacgt cagttgtggc taactttcca tcctcatgga acagaagtta
781 tggatgcatt cctggtccac tgggtcaatg ttcctggttc attacctggc tccttcattc
841 acaaccagga acaaagagtt acagatccca ctgctccatc gaaatgagtt gcactgctgg
901 accactgctg gaccaccgtc cacagcgtgc agagcttcac tcccaaatag tagttgaata
961 accaactaat taattagaaa atgaatgaat gaccccttct ttcagacctg cactaatcta
1021 aatcgacata acgagtcagg cccgctcaac cgcacgattc aactcgagaa ccaaatgcaa
1081 gctctgaata aagcaatagt cagggctctc tatcatccag caaagtaaac actatccact
1141 ccgggattga gaaccaagca ctggtgcggc cagccagagt ttcccatcct ccttgtctaa
1201 tccatcacag atccgcgtat tccgtgcccc tttccttgtt ccatccatca gttggtctct
1261 ccatttgtct csckssawyt ccttttaatc cttatattca tcaatctcaa gacattcacc
1321 catccacata tctacacacc tacacatcac acatccgtgc attcatccag ctaagcactg
1381 tttcatactg actctttgtg aagactcagc tcttcgcctg tgcctg
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