LOCUS HO464015 1520 bp mRNA linear EST 19-JAN-2012
DEFINITION klebsormidium_60434_c11665_c Klebsormidium flaccidum EST library
Klebsormidium flaccidum cDNA 5', mRNA sequence.
ACCESSION HO464015
VERSION HO464015.1
DBLINK BioSample: SAMN00169691
KEYWORDS EST.
SOURCE Klebsormidium flaccidum
ORGANISM Klebsormidium flaccidum
Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae;
Klebsormidiales; Klebsormidiaceae; Klebsormidium.
REFERENCE 1 (bases 1 to 1520)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1520
/organism="Klebsormidium flaccidum"
/mol_type="mRNA"
/strain="UTEX 321"
/db_xref="taxon:3175"
/clone_lib="SAMN00169691 Klebsormidium flaccidum EST
library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 349 a 390 c 487 g 287 t
ORIGIN
1 gtcgaaggac gcgctgatta tcacagcgac aactagggaa acgattgaga agctgatcaa
61 ggaggcaatg gcgggcgcgc tggcggctgt ggaggagcgc aaagtgacca acgtcaaccg
121 gtggtcgatc gaggagtgct actgggactg cattgggacc cgccccgttc gcccactgca
181 ctcggtcgtt ctggatggag ggatcatcga gactctcgtc aaagacgcac gcactttcat
241 ggccagcgcc aaatggtaca gcgaccgggc gtgccgcacc ggagggggta tttgctgcac
301 ggcccccctg gctgcggcaa gtcgagcagc atcctggccc tggccgggga gcttaacctg
361 gacgttaacc tggtgggttt gtcctccaag gacatgaccg acgagatgct kcmcgrrmkc
421 cttcagcagg tgcgatgcgc ggtccattct ggtcctggag gacatcgacg ccgcgttcgc
481 gcagcgcgac ggcaagagcc ccaacaccct ctccttctcc ggcctcctca actgcatcga
541 cggcgtctgc gcgcaggagg gtcgcattct gatcatgacg accaatcatc tggacaagct
601 ggaccccgct ttgacgcgcc ccgggcggtg cgacgtacac ctgcgcctgg ggctcgcctc
661 ccgggcacaa gttaccacca tgtaccgccg attctacccg gacgccccgg aagatgacgt
721 caacgccttt gccgaccggg ttcccgagag cactgtttcc ccggccaagt tgcagggctt
781 ctttttgctc catcgagacg accgggaggc tgccctggca gacattcccg agctcacgga
841 ggttgcccta ggggggatcc cccggggtcg ggaacggaaa tggagcggaa acggaacaaa
901 aacccccctg cgacgatgtc ccaggggctc cagcggactc tggggcagag aatgcgggaa
961 acggaaacgg tgagagcgat ttagagtcgg acggcgggtc agactccggg agtactaacc
1021 ggtcggaaag tgagagctta gaaaaagatg aggatttttg cgcgcgggta gagacggata
1081 ggatggagaa ggcagagaag gtagatgcgg cagccgtgtt gcttagcgaa gtagatgcag
1141 gtgcgaagac caggcggtcg aaagggaagc gcttggcgaa gatgttctcg tgtatgggga
1201 cctaacgaaa caatttgacg cattcacatt tggcaaggat gagaaaagtc gtgaacatct
1261 cgaaaggagc gcgcgtcagg tgaatggaga catttgcttc agaaggtctg ttgtgatttg
1321 attgttgtaa agagacgcct agctaagaga tggagtcgag acatattgcg tatgtcaacc
1381 cgagcagcat attgagaggg gtcgttactg aagcaggttg ccttcgaccc tttcgatgag
1441 aagatgagcg gattgkttgg gggtagttgc aatgtacatt gagatcaact taaataaatt
1501 tcgaaaaatg tttaccgaac
//