LOCUS HO450936 1440 bp mRNA linear EST 19-JAN-2012
DEFINITION klebsormidium_60434_c13050_c Klebsormidium flaccidum EST library
Klebsormidium flaccidum cDNA 5', mRNA sequence.
ACCESSION HO450936
VERSION HO450936.1
DBLINK BioSample: SAMN00169691
KEYWORDS EST.
SOURCE Klebsormidium flaccidum
ORGANISM Klebsormidium flaccidum
Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae;
Klebsormidiales; Klebsormidiaceae; Klebsormidium.
REFERENCE 1 (bases 1 to 1440)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1440
/organism="Klebsormidium flaccidum"
/mol_type="mRNA"
/strain="UTEX 321"
/db_xref="taxon:3175"
/clone_lib="SAMN00169691 Klebsormidium flaccidum EST
library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 357 a 414 c 326 g 343 t
ORIGIN
1 cgtgcggaca gttccaagag ctgcccggcg tcccattacg tctggccgaa aacgtcgcaa
61 gcacaagccc caagctgcag cgccagctac ccaacatgca gtcagtgcat attacttcac
121 attgagagga ggtttcaaaa cactggcttc gatgaagatt gcgtagatcc ggatttaagc
181 gatcggtgca ctggtctcag tgaattacta cgcataggat cctgcacggc cttgcttttc
241 aatggctgtt gaatacgttt caaatctcgt gtttcaaaag acctagactt caactccaat
301 tctcgttgga tgttgacaag atcttcaagg gtggtcggaa gccagactgt agatcagtgt
361 ggcgtctagt aataggcttt tcttggattc ccctgaaaaa catacagacg aggattgaca
421 aatcaattca acgggccatg cgacggccgc tttctgcaat ccgttcaagc cgcggctacc
481 cttaatcctt ctacgaggtt attaatgagg agcataccac ttctttttgt ttggccgagg
541 ggaagcacat cagggtttga tatcaagcaa gcattcgtct ttattagagt caactatgca
601 gtcagacaag gacgtaacag accaatcgtt gccccggcct cagattgcat aatgtgctga
661 aactacaacc cactgataat caggtatacg agcccggcca aaattgcgag ccactcgcta
721 atccgaagct caagatcaac gactagcctg ttgtaacata gcacctcaaa gcgattagcc
781 aagcgccggt caaagcagcg agtccgacta agacgttcgc tcgatagcaa ttctaccaga
841 gctcggtagc aatcatcgtt ttgaaggatt gaaggaacca aacagagctc aaaaagaaag
901 cataaaagca gctgatccct ccaaatcctc aaagaaacct tttgaccata cactcgccca
961 gaacttgttt gttttggccg taaaatatgc cctttggtga gagctcaatt cactttgaac
1021 cggttttcac ctcatctttc aatgccgtca agtcaatgtc tgaaccagtc tgcatccagt
1081 ctgaaccaag tcttactcgc cccgtcctta acccactctt gaacccgtcc ctaacccggt
1141 ctcaaaccaa tcaggtactc accagcgggt ttggccggtg cttgtagccc agcatcatgc
1201 gcttcttgta ctgctcgtag atatcgtcgc tcgacgttgg ctcgtgcgtc tgcgcggcgc
1261 cgacccccag cccgtccagc tttcgcgccc cccgccgcga gcgggtctat cattcctgcg
1321 ccgcctgccc caaggccgct gccttccgtc cagccccatc ttagacagca gccttcgtgc
1381 cccacgttgg acgacccaat cttattccgg tcttcggggg cggaatccgg atcccgggaa
//