LOCUS HO450290 1453 bp mRNA linear EST 19-JAN-2012
DEFINITION klebsormidium_60434_c11068_c Klebsormidium flaccidum EST library
Klebsormidium flaccidum cDNA 5', mRNA sequence.
ACCESSION HO450290
VERSION HO450290.1
DBLINK BioSample: SAMN00169691
KEYWORDS EST.
SOURCE Klebsormidium flaccidum
ORGANISM Klebsormidium flaccidum
Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae;
Klebsormidiales; Klebsormidiaceae; Klebsormidium.
REFERENCE 1 (bases 1 to 1453)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1453
/organism="Klebsormidium flaccidum"
/mol_type="mRNA"
/strain="UTEX 321"
/db_xref="taxon:3175"
/clone_lib="SAMN00169691 Klebsormidium flaccidum EST
library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 337 a 397 c 379 g 340 t
ORIGIN
1 gatcatttgc acatagacct acccttagct gcgcagagca cgatagacat ctgtttgtca
61 ccccaagttg ttaaccctac tcgagcttga cgctacatga ttggctgcaa caacatttac
121 gttgccgtgt tgactcaact ccaacaagcc ctcaggattc catacgtggt agtcactggc
181 acacttgagg cctcagaaaa ctggcatagc agccccaagg gttcgcaccg accctcaaaa
241 cccacttagg tcgcattagc ctttggggtc actcaaacgg accgtcacaa cgttccgcct
301 tttgcatgcg gagagggacg ctgttgtgct gagcgcactt ctcacccaat gggggggagc
361 accggctgct cttcttctta ctcttgcgag aggatgacgc gccgccgctt ctttacgagg
421 cctctccttc tcagtgttag gctttgacta cagtcgccag ctgaaggttg acttgaaccc
481 ttcttgccgc cattgctttg aaggacgcga gaagatgaag gtacctgtga gttgcagctt
541 gggggcgtta tgcaggtccg ctgtctgaag gcgctgccac aggaccaagc gaatggagac
601 gtaggcagat accccggagc gggtctcttc ttgcttagca gatttgggag accccttggc
661 agataagctg ggctgaggct tttctcgttg ttaaacgccc tgtagaagga cggaccttgg
721 atactggcac agtcttcgtc ttggaggaag tccgcaagtg agcgtccaga ctctgagccg
781 tcaacagagc ggggcgcata ctcaacacct tcaatatcct ctccttccgg ttcttcagag
841 gaggaaggat cactttccca gtggaaacgc aggtcagaag ccatgccagc agcccccagt
901 tgcaaattta atggtgctct tctgcaagct gtttgacgaa gctggccccc tctgctaaca
961 gcttattact acctacacaa gagcgtacgt tcagaagctc ataactcgga ccacactgcc
1021 agcaactcga gcacaacaca ttgcactatg cgcttggcag ctgcgcacag atgctaagcg
1081 ggattggagc tgccctccac cacttgacca gcttagcccg ctggtacctc gcactcacag
1141 tggcagctga tccacggcaa atcaggcctt ctacaattca aagtaagcta gtggtacgtg
1201 atttgctaag aaaggcgctg cagaacatgg cgggcatgtt gtctctgaga aaaggatgct
1261 tgtaggtcgc tgaaatctga gtggcacgcg tgctttggaa ctttcctgag acgctgggaa
1321 agagtgctaa aggaatgaat gtatgagggg gcaggacctc tctttatagg tacagattct
1381 ctccaactcc cttgcaatgg gaggcctgag tcagactcag acgtctcagc aagctccatt
1441 ttagactgtc ccg
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