LOCUS HO439348 1080 bp mRNA linear EST 19-JAN-2012
DEFINITION klebsormidium_60434_c13935_c Klebsormidium flaccidum EST library
Klebsormidium flaccidum cDNA 5', mRNA sequence.
ACCESSION HO439348
VERSION HO439348.1
DBLINK BioSample: SAMN00169691
KEYWORDS EST.
SOURCE Klebsormidium flaccidum
ORGANISM Klebsormidium flaccidum
Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae;
Klebsormidiales; Klebsormidiaceae; Klebsormidium.
REFERENCE 1 (bases 1 to 1080)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1080
/organism="Klebsormidium flaccidum"
/mol_type="mRNA"
/strain="UTEX 321"
/db_xref="taxon:3175"
/clone_lib="SAMN00169691 Klebsormidium flaccidum EST
library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 178 a 319 c 287 g 295 t
ORIGIN
1 aagtctaaga gcatgmgtag cattgactgt ggatctgtta gtgttggccg cacatgacca
61 attgaaatcg ttctttacaa ttatcggaac caccaacgcg ctctttgcca aagctggcag
121 ggctaaccag tctttcaaaa tttctcgcgg ttgccagatc caattacact gcatgccaag
181 gtctcttctg tcaatatact tgaaaacacg ttgcgtctgc attcttcctc ggcgaggcac
241 gctcacaact tccactcctc atcgctgtcg tcgtcgtcgc ttggttccgt agggatgtct
301 tcgctgctcc cttcgcccgc gtcctcatcc tcctcctttc ggcctttctt tgccttcttg
361 cccgctggcg ctttggcagc cgaagtggct tttcgtttgg atctcggagg agcttgtgtc
421 tgcgcttccg tctccggggt tccgttctct ccttcgtcgt cgctgtcgag gttgatggtg
481 acgggccgct tcttgggtgc tttgcttgca gcagcgctcg ctggcttctc tttcggtggt
541 cttgacactg cgggctttgc agagggcggt cgaagcggca catcgtcact gtcgctgtca
601 gcatcgtcgt ccaactcgtc gtccgttctg ggctcagcaa acctgaagct tctgccagca
661 gtccgcgaag acttccgccg tgctgcagcg cctttctgat catcttgcgc tgttctggcg
721 atctctgctt cagagtcaag cgcgtctggt cctgcagtac cgccttcttc ttcctggtcg
781 tcagggtcag gctcagccgg cttgctggca gtggcctcag gatgagcctt tgccgttgtg
841 tcaggttgcc tggcggctcc tccagagaag tcgactcctt cgtgaagact cctcttcacc
901 gaaacaggga aaggtgcggt tagacactcg acttctacgg cctacccttt cgcccttttc
961 aacacaccac tggattagct ggtgatgtca atggtcagag gggaaacacc aaggctctga
1021 ccgagctcac gcggaaccaa gctgtgaaga gactgactga atgggtggac gatcccggga
//