LOCUS HO371414 1092 bp mRNA linear EST 20-JAN-2012
DEFINITION chaetospheridium_74953.1_c42617_c Chaetosphaeridium globosum EST
library Chaetosphaeridium globosum cDNA 5', mRNA sequence.
ACCESSION HO371414
VERSION HO371414.1
DBLINK BioSample: SAMN00169694
KEYWORDS EST.
SOURCE Chaetosphaeridium globosum
ORGANISM Chaetosphaeridium globosum
Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae;
Coleochaetales; Chaetosphaeridiaceae; Chaetosphaeridium.
REFERENCE 1 (bases 1 to 1092)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1092
/organism="Chaetosphaeridium globosum"
/mol_type="mRNA"
/strain="SAG 26.98"
/db_xref="taxon:96477"
/clone_lib="SAMN00169694 Chaetosphaeridium globosum EST
library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 236 a 367 c 275 g 207 t
ORIGIN
1 caacgtgaat ggagtgaatt gccatgctct gccattactg aagtacagac caaaatttcc
61 taggagacat acgagatgtt tcttcaacaa gaccgatcca ccaccacatg caagggaaag
121 ccctggcctg cattccagat taggcccgcc accgccgatc caacacccac gtctggcgct
181 tgcgcccctc aatcagacgg acaacgcccc ggggaggacc caggttgcta ccgtccgtca
241 ccaccaaccc tgatgcacac tggagcccct caaccccagt gccactgcca ggccacatgc
301 tgcagctact gcaacagccc tctcccagta tgacagacca acagctgctg cactggctga
361 ccgccaccat atggccacct ctcacctgcc caatacagcg ccggctgcaa tgcagtgacc
421 gcaggccact tcccccatgc agcagcagca gcgtttgcrt tcacttcttg ctggccttgg
481 cagcrgcctt rgtgaccttg ccagaagcat ccttcttctc aacagccttg atgacaccga
541 cggccaccgt ctgacgcatr tcacgcacgg caaarcggcc cagmggaggr tactcagaga
601 aagtctccac gcacatgggc ttggtgggaa tcatcttgac gaaaccagcg tcaccgttct
661 tcaggaactt gggctccttc tcgagctcct tgcccgaacg cctgtccacc ttggtgacca
721 gctcggcgaa cttcacagct atgtgggaag tgtggcaatc cagcaccggg gcgtagccgt
781 tgccaatctg gccagggtgg ttcatgatga tgacctggct ggtgaagctg gcagcctcct
841 ttgcggggtc gttcttggag tcagaggcga caaacccacg cttcagctcc ttcacagaca
901 cgttcttcac gttgaagccc acgttgtcac cgggggcagc ctcgggcagg gactcgtggt
961 gcatctccac ggacttgacc tcagtggtca ggccagaggg ggcgaacacc acgaccatgc
1021 cgggcttaag gacgccagtc tccacacgtc ccacaggcac tgtgccaata ccgccgaatc
1081 ttgtacacgt cc
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