LOCUS HO368121 1214 bp mRNA linear EST 20-JAN-2012
DEFINITION chaetospheridium_74953.1_c12023_c Chaetosphaeridium globosum EST
library Chaetosphaeridium globosum cDNA 5', mRNA sequence.
ACCESSION HO368121
VERSION HO368121.1
DBLINK BioSample: SAMN00169694
KEYWORDS EST.
SOURCE Chaetosphaeridium globosum
ORGANISM Chaetosphaeridium globosum
Eukaryota; Viridiplantae; Streptophyta; Coleochaetophyceae;
Coleochaetales; Chaetosphaeridiaceae; Chaetosphaeridium.
REFERENCE 1 (bases 1 to 1214)
AUTHORS Timme,R.E., Bachvaroff,T.R. and Delwiche,C.F.
TITLE Broad phylogenomic sampling and the sister lineage of land plants
JOURNAL PLoS ONE 7 (1), e29696 (2012)
COMMENT Contact: Delwiche CF
Department of Cell Biology and Molecular Genetics
University of Maryland - College Park
2108 Bioscience Research Building, College Park, MD 20742, USA
Tel: 301 405 8286
Email: delwiche@umd.edu
ESTs cleaned with Lucy, seqclean, and repeatmasker.
FEATURES Location/Qualifiers
source 1..1214
/organism="Chaetosphaeridium globosum"
/mol_type="mRNA"
/strain="SAG 26.98"
/db_xref="taxon:96477"
/clone_lib="SAMN00169694 Chaetosphaeridium globosum EST
library"
/dev_stage="all except for sexual stages"
/note="Culture harvested from various time points during
the day and across the life cycle. No sexual stage was
seen for this strain."
BASE COUNT 241 a 359 c 384 g 230 t
ORIGIN
1 ccaggcggcc agttgctgcc cgcaggtcat tggtgatcag caacaatgtg aagaagttga
61 acacgaagac cccctatggc atcaacggag atgcgaagtt caaggttgat gcccagggcc
121 agaaggcaaa gggcaagaac gtcttccagt ttgtgaagaa gtatggtgcc aacgtggaca
181 cttctgtgtg ttgtgtgcgc cgatccagca tctcttgctt ggtgagcgac gtgctagggg
241 gcggcgcccc gagcaaagcg tccgaggacc acgcaggccc ccgccgccgt acttggcgag
301 ccagttccgg aacgccagca ccaggcggtc ggccccggtg ggtgtgaagg tgaggcgcgt
361 gtactccttg ccggtgaccc ctcccttgcc agatgctcca agctgcatca aaatcttctc
421 ctgtccctgg aggacgatca tgtctccatc gtacacctta ttggcggtca tatgctccaa
481 ccacctcggc atgatattcc accagttggg ccccggcatg aggaactgga agaagttgcg
541 cgtgctgacg aggatggagc gcgagcggcc gggggccatg ggcacagtga aggagcagag
601 ggtgatctgc caggcagggc cagttggcct cgggatggtg atccggttga cgaacatgca
661 cggcgccaca aactcggccg tgatgcctcc cccatcccga ggccctgcct ctccggcgcc
721 cttgaagccg gcagggccca gggcctcgac tgtgaggggc atgggcttgc ctttatcacg
781 ccgcccagtc accttgtgat gcgcatagtg aatgtgcgat gggtcagcca cattctccat
841 gagggtgtca aagttgtagt agaggtcgcg ctgaatggca gcagtcgcaa aactcgggtc
901 atcgaactct tctggtggac tcggaagtgg cgtcttagcc gcgagatcgg ccgtcttctt
961 gtccggccac acccacaaac acccgaagaa ctctcgagtg ggtagggatg cacacgctgc
1021 cctctccgac tccttagcgc gcgcctccgg cccctcagac ttggcttgag gaatggaagt
1081 gcagtttccc tcgccatcaa aggaccagcc gtggtaggag cactggaggc agcccgtctc
1141 gtcgatgcga ccctccgaga ggggagcaag cctgtgggga cacaggtcag ggaaggctct
1201 ccagttgccg cctt
//