LOCUS       GH670099                 774 bp    mRNA    linear   EST 18-MAY-2010
DEFINITION  CBZA41589.g1 CBZA: Normalized channel catfish cDNA library from
            stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2,
            AUL_M) Ictalurus punctatus cDNA 3' similar to zebrafish RefSeq,
            XP_001919123.1, PREDICTED: similar to Small EDRK-rich factor 2
            (4F5rel) (h4F5rel) (Gastric cancer-related protein VRG107) [Danio
            rerio], mRNA sequence.
ACCESSION   GH670099
VERSION     GH670099.1
DBLINK      BioSample: SAMN00164693
KEYWORDS    EST.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Wang,S., Peatman,E., Abernathy,J., Waldbieser,G., Lindquist,E.,
            Richardson,P., Lucas,S., Wang,M., Li,P., Thimmapuram,J., Liu,L.,
            Vullaganti,D., Kucuktas,H., Murdock,C., Small,B.C., Wilson,M.,
            Liu,H., Jiang,Y., Lee,Y., Chen,F., Lu,J., Wang,W., Xu,P.,
            Somridhivej,B., Baoprasertkul,P., Quilang,J., Sha,Z., Bao,B.,
            Wang,Y., Wang,Q., Takano,T., Nandi,S., Liu,S., Wong,L.,
            Kaltenboeck,L., Quiniou,S., Bengten,E., Miller,N., Trant,J.,
            Rokhsar,D. and Liu,Z.
  TITLE     Assembly of 500,000 inter-specific catfish expressed sequence tags
            and large scale gene-associated marker development for whole genome
            association studies
  JOURNAL   Genome Biol. 11 (1), R8 (2010)
   PUBMED   20096101
COMMENT     Contact: Liu ZJ
            The Fish Molecular Genetics and Biotechnology Laboratory,
            Department of Fisheries and Allied Aquacultures and Program of Cell
            and Molecular Biosciences
            Auburn University
            203 Swingle Hall, Auburn University, Auburn, AL 36849, USA
            Tel: 334 844 4054
            Fax: 334 844 9208
            Email: zliu@acesag.auburn.edu
            cDNA library sequencing: DOE Joint Genome Institute
            (http://www.jgi.doe.gov)
            Seq primer: M13 Reverse.
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /clone_lib="SAMN00164693 CBZA: Normalized channel catfish
                     cDNA library from stomach, muscle, olfactory tissue and
                     trunk kidney (mixed tissue 2, AUL_M)"
                     /note="Organ: mixed tissues from stomach, muscle,
                     olfactory tissue and trunk kidney; Vector: pDNR-Lib;
                     Site_1: Sfi IA; Site_2: Sfi IB"
BASE COUNT          211 a          158 c          153 g          252 t
ORIGIN      
        1 ggggatgggg tggggaatct gtttaaaaat gtacagttta ttaagggtgt ttaatacaaa
       61 aatacagaaa ctcgaaagtc aattcatatg ttgactggca gtctccctct ttaaaatgat
      121 ctgctccatg tctagtacac actcgaaaat gatttgaaat caaaaggaga caaaagacag
      181 aagattagga tgcaatctca tgacatttga accaagaatt atcagtaaca cagttgtgtt
      241 taacgcgtgg tggaattaca catcgatatt tttaaccagt taaaaatacg attcaaccaa
      301 tttacgtatc ataatttaat tattgcgtgt actgatcata tctggaacaa tgggtagatc
      361 attacttaac tcaaagattt tccctcataa gtcagatctt tcggaagcca cattgtagac
      421 tattttctcc aactgattac cagtcagtaa tagtattttt agctgtctat atggttacaa
      481 cttttcgtga gccgcaagct gttgaatgtt gggaaccact gcaaaaacgc atgctagtcc
      541 caatgtgtcc actggctatt ttgacttcgt gtcagtcttc tcgttggctt ttttctgttt
      601 ctgctgcatt atctctgcat ccctctgctt gcgagcagca gcggaaagac catcatcctt
      661 cctgcccttg ccatgctcat tttgcttctt ggcgttcttc tggcgggcaa gttcacgctg
      721 gtttcctcca gctgttaaag atggtctacc agtttgacag ctcggcttgt gttt
//