LOCUS GH670099 774 bp mRNA linear EST 18-MAY-2010 DEFINITION CBZA41589.g1 CBZA: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL_M) Ictalurus punctatus cDNA 3' similar to zebrafish RefSeq, XP_001919123.1, PREDICTED: similar to Small EDRK-rich factor 2 (4F5rel) (h4F5rel) (Gastric cancer-related protein VRG107) [Danio rerio], mRNA sequence. ACCESSION GH670099 VERSION GH670099.1 DBLINK BioSample: SAMN00164693 KEYWORDS EST. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 774) AUTHORS Wang,S., Peatman,E., Abernathy,J., Waldbieser,G., Lindquist,E., Richardson,P., Lucas,S., Wang,M., Li,P., Thimmapuram,J., Liu,L., Vullaganti,D., Kucuktas,H., Murdock,C., Small,B.C., Wilson,M., Liu,H., Jiang,Y., Lee,Y., Chen,F., Lu,J., Wang,W., Xu,P., Somridhivej,B., Baoprasertkul,P., Quilang,J., Sha,Z., Bao,B., Wang,Y., Wang,Q., Takano,T., Nandi,S., Liu,S., Wong,L., Kaltenboeck,L., Quiniou,S., Bengten,E., Miller,N., Trant,J., Rokhsar,D. and Liu,Z. TITLE Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies JOURNAL Genome Biol. 11 (1), R8 (2010) PUBMED 20096101 COMMENT Contact: Liu ZJ The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences Auburn University 203 Swingle Hall, Auburn University, Auburn, AL 36849, USA Tel: 334 844 4054 Fax: 334 844 9208 Email: zliu@acesag.auburn.edu cDNA library sequencing: DOE Joint Genome Institute (http://www.jgi.doe.gov) Seq primer: M13 Reverse. FEATURES Location/Qualifiers source 1..774 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /clone_lib="SAMN00164693 CBZA: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL_M)" /note="Organ: mixed tissues from stomach, muscle, olfactory tissue and trunk kidney; Vector: pDNR-Lib; Site_1: Sfi IA; Site_2: Sfi IB" BASE COUNT 211 a 158 c 153 g 252 t ORIGIN 1 ggggatgggg tggggaatct gtttaaaaat gtacagttta ttaagggtgt ttaatacaaa 61 aatacagaaa ctcgaaagtc aattcatatg ttgactggca gtctccctct ttaaaatgat 121 ctgctccatg tctagtacac actcgaaaat gatttgaaat caaaaggaga caaaagacag 181 aagattagga tgcaatctca tgacatttga accaagaatt atcagtaaca cagttgtgtt 241 taacgcgtgg tggaattaca catcgatatt tttaaccagt taaaaatacg attcaaccaa 301 tttacgtatc ataatttaat tattgcgtgt actgatcata tctggaacaa tgggtagatc 361 attacttaac tcaaagattt tccctcataa gtcagatctt tcggaagcca cattgtagac 421 tattttctcc aactgattac cagtcagtaa tagtattttt agctgtctat atggttacaa 481 cttttcgtga gccgcaagct gttgaatgtt gggaaccact gcaaaaacgc atgctagtcc 541 caatgtgtcc actggctatt ttgacttcgt gtcagtcttc tcgttggctt ttttctgttt 601 ctgctgcatt atctctgcat ccctctgctt gcgagcagca gcggaaagac catcatcctt 661 cctgcccttg ccatgctcat tttgcttctt ggcgttcttc tggcgggcaa gttcacgctg 721 gtttcctcca gctgttaaag atggtctacc agtttgacag ctcggcttgt gttt //