LOCUS GH670098 786 bp mRNA linear EST 18-MAY-2010 DEFINITION CBZA41589.b1 CBZA: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL_M) Ictalurus punctatus cDNA 5' similar to zebrafish RefSeq, XP_001919123.1, PREDICTED: similar to Small EDRK-rich factor 2 (4F5rel) (h4F5rel) (Gastric cancer-related protein VRG107) [Danio rerio], mRNA sequence. ACCESSION GH670098 VERSION GH670098.1 DBLINK BioSample: SAMN00164693 KEYWORDS EST. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 786) AUTHORS Wang,S., Peatman,E., Abernathy,J., Waldbieser,G., Lindquist,E., Richardson,P., Lucas,S., Wang,M., Li,P., Thimmapuram,J., Liu,L., Vullaganti,D., Kucuktas,H., Murdock,C., Small,B.C., Wilson,M., Liu,H., Jiang,Y., Lee,Y., Chen,F., Lu,J., Wang,W., Xu,P., Somridhivej,B., Baoprasertkul,P., Quilang,J., Sha,Z., Bao,B., Wang,Y., Wang,Q., Takano,T., Nandi,S., Liu,S., Wong,L., Kaltenboeck,L., Quiniou,S., Bengten,E., Miller,N., Trant,J., Rokhsar,D. and Liu,Z. TITLE Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies JOURNAL Genome Biol. 11 (1), R8 (2010) PUBMED 20096101 COMMENT Contact: Liu ZJ The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences Auburn University 203 Swingle Hall, Auburn University, Auburn, AL 36849, USA Tel: 334 844 4054 Fax: 334 844 9208 Email: zliu@acesag.auburn.edu cDNA library sequencing: DOE Joint Genome Institute (http://www.jgi.doe.gov) Seq primer: M13 Forward. FEATURES Location/Qualifiers source 1..786 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /clone_lib="SAMN00164693 CBZA: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL_M)" /note="Organ: mixed tissues from stomach, muscle, olfactory tissue and trunk kidney; Vector: pDNR-Lib; Site_1: Sfi IA; Site_2: Sfi IB" BASE COUNT 256 a 151 c 178 g 201 t ORIGIN 1 gttgcttcag gggaaaaaaa agaaggggtt aggcttcgct ttgcccggac ttaaaaagca 61 tcgaaagaca tgaccatttg gtctgaccag ctatcagctt ccaaaacaca agccgagctg 121 gtcaaactgg tagaccatct ttaacagctg gaggaaacca gcgtgaactt gcccgccaga 181 agaacgccaa gaagcaaaat gagcatggca agggcaggaa ggatgatggt ctttccgctg 241 ctgctcgcaa gcagagggat gcagagataa tgcagcagaa acagaaaaaa gccaacgaga 301 agactgacac gaagtcaaaa tagccagtgg acacattggg actagcatgc gtttttgcag 361 tggttcccaa cattcaacag cttgcggctc acgaaaagtt gtaaccatat agacagctaa 421 aaatactatt actgactggt aatcagttgg agaaaatagt ctacaatgtg gcttccgaaa 481 gatctgactt atgagggaaa atctttgagt taagtaatga tctacccatt gttccagata 541 tgatcagtac acgcaataat taaattatga tacgtaaatt ggttgaatcg tatttttaac 601 tggttaaaaa tatcgatgtg taattccacc acgcgttaaa cacaactgtg ttactgataa 661 ttcttggttc aaatgtcatg agattgcatc ctaaatcttc tgtcttttgt ctccttttga 721 tttcaaatca ttttcgagtg tgtactagac atggagcaga tcattttaaa gaggggagac 781 tgccag //