LOCUS       GH670098                 786 bp    mRNA    linear   EST 18-MAY-2010
DEFINITION  CBZA41589.b1 CBZA: Normalized channel catfish cDNA library from
            stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2,
            AUL_M) Ictalurus punctatus cDNA 5' similar to zebrafish RefSeq,
            XP_001919123.1, PREDICTED: similar to Small EDRK-rich factor 2
            (4F5rel) (h4F5rel) (Gastric cancer-related protein VRG107) [Danio
            rerio], mRNA sequence.
ACCESSION   GH670098
VERSION     GH670098.1
DBLINK      BioSample: SAMN00164693
KEYWORDS    EST.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Wang,S., Peatman,E., Abernathy,J., Waldbieser,G., Lindquist,E.,
            Richardson,P., Lucas,S., Wang,M., Li,P., Thimmapuram,J., Liu,L.,
            Vullaganti,D., Kucuktas,H., Murdock,C., Small,B.C., Wilson,M.,
            Liu,H., Jiang,Y., Lee,Y., Chen,F., Lu,J., Wang,W., Xu,P.,
            Somridhivej,B., Baoprasertkul,P., Quilang,J., Sha,Z., Bao,B.,
            Wang,Y., Wang,Q., Takano,T., Nandi,S., Liu,S., Wong,L.,
            Kaltenboeck,L., Quiniou,S., Bengten,E., Miller,N., Trant,J.,
            Rokhsar,D. and Liu,Z.
  TITLE     Assembly of 500,000 inter-specific catfish expressed sequence tags
            and large scale gene-associated marker development for whole genome
            association studies
  JOURNAL   Genome Biol. 11 (1), R8 (2010)
   PUBMED   20096101
COMMENT     Contact: Liu ZJ
            The Fish Molecular Genetics and Biotechnology Laboratory,
            Department of Fisheries and Allied Aquacultures and Program of Cell
            and Molecular Biosciences
            Auburn University
            203 Swingle Hall, Auburn University, Auburn, AL 36849, USA
            Tel: 334 844 4054
            Fax: 334 844 9208
            Email: zliu@acesag.auburn.edu
            cDNA library sequencing: DOE Joint Genome Institute
            (http://www.jgi.doe.gov)
            Seq primer: M13 Forward.
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /clone_lib="SAMN00164693 CBZA: Normalized channel catfish
                     cDNA library from stomach, muscle, olfactory tissue and
                     trunk kidney (mixed tissue 2, AUL_M)"
                     /note="Organ: mixed tissues from stomach, muscle,
                     olfactory tissue and trunk kidney; Vector: pDNR-Lib;
                     Site_1: Sfi IA; Site_2: Sfi IB"
BASE COUNT          256 a          151 c          178 g          201 t
ORIGIN      
        1 gttgcttcag gggaaaaaaa agaaggggtt aggcttcgct ttgcccggac ttaaaaagca
       61 tcgaaagaca tgaccatttg gtctgaccag ctatcagctt ccaaaacaca agccgagctg
      121 gtcaaactgg tagaccatct ttaacagctg gaggaaacca gcgtgaactt gcccgccaga
      181 agaacgccaa gaagcaaaat gagcatggca agggcaggaa ggatgatggt ctttccgctg
      241 ctgctcgcaa gcagagggat gcagagataa tgcagcagaa acagaaaaaa gccaacgaga
      301 agactgacac gaagtcaaaa tagccagtgg acacattggg actagcatgc gtttttgcag
      361 tggttcccaa cattcaacag cttgcggctc acgaaaagtt gtaaccatat agacagctaa
      421 aaatactatt actgactggt aatcagttgg agaaaatagt ctacaatgtg gcttccgaaa
      481 gatctgactt atgagggaaa atctttgagt taagtaatga tctacccatt gttccagata
      541 tgatcagtac acgcaataat taaattatga tacgtaaatt ggttgaatcg tatttttaac
      601 tggttaaaaa tatcgatgtg taattccacc acgcgttaaa cacaactgtg ttactgataa
      661 ttcttggttc aaatgtcatg agattgcatc ctaaatcttc tgtcttttgt ctccttttga
      721 tttcaaatca ttttcgagtg tgtactagac atggagcaga tcattttaaa gaggggagac
      781 tgccag
//