LOCUS GH664935 735 bp mRNA linear EST 19-MAY-2010 DEFINITION CBZA38365.g1 CBZA: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL_M) Ictalurus punctatus cDNA 3' similar to zebrafish RefSeq, XP_001919123.1, PREDICTED: similar to Small EDRK-rich factor 2 (4F5rel) (h4F5rel) (Gastric cancer-related protein VRG107) [Danio rerio], mRNA sequence. ACCESSION GH664935 VERSION GH664935.1 DBLINK BioSample: SAMN00164693 KEYWORDS EST. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 735) AUTHORS Wang,S., Peatman,E., Abernathy,J., Waldbieser,G., Lindquist,E., Richardson,P., Lucas,S., Wang,M., Li,P., Thimmapuram,J., Liu,L., Vullaganti,D., Kucuktas,H., Murdock,C., Small,B.C., Wilson,M., Liu,H., Jiang,Y., Lee,Y., Chen,F., Lu,J., Wang,W., Xu,P., Somridhivej,B., Baoprasertkul,P., Quilang,J., Sha,Z., Bao,B., Wang,Y., Wang,Q., Takano,T., Nandi,S., Liu,S., Wong,L., Kaltenboeck,L., Quiniou,S., Bengten,E., Miller,N., Trant,J., Rokhsar,D. and Liu,Z. TITLE Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies JOURNAL Genome Biol. 11 (1), R8 (2010) PUBMED 20096101 COMMENT Contact: Liu ZJ The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences Auburn University 203 Swingle Hall, Auburn University, Auburn, AL 36849, USA Tel: 334 844 4054 Fax: 334 844 9208 Email: zliu@acesag.auburn.edu cDNA library sequencing: DOE Joint Genome Institute (http://www.jgi.doe.gov) Seq primer: M13 Reverse. FEATURES Location/Qualifiers source 1..735 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /clone_lib="SAMN00164693 CBZA: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL_M)" /note="Organ: mixed tissues from stomach, muscle, olfactory tissue and trunk kidney; Vector: pDNR-Lib; Site_1: Sfi IA; Site_2: Sfi IB" BASE COUNT 208 a 153 c 135 g 239 t ORIGIN 1 aaaaatgtac agtttattaa gggtgtttaa tacaaaaata cagaaactcg aaagtcaatt 61 catatgttga ctggcagtct ccctctttaa aatgatctgc tccatgtcta gtacacactc 121 gaaagtgatt tgaaatcaaa aggagacaaa agacagaaga ttaagatgca atctcatgac 181 atttgaacca agaattatca gtaacacagt tgtgtttaac gcgtggtgga attacacatc 241 gatattttta accagttaaa aatacgattc aaccaattta cgtatcataa tttaattatt 301 gcgtgtactg atcatatctg gaacaatggg tagatcatta cttaactcaa agattttccc 361 tcataagtca gatctttcgg aagccacatt gtagactatt ttctccaact gattaccagt 421 cagtaatagt atttttagct gtctatatgg ttacaacttt tcgtgagccg caagctgttg 481 aatgttggga accactgcaa aaacgcatgc tagtcccaat gtgtccactg gctattttga 541 cttcgtgtca gtcttctcgt tggctttttt ctgtttctgc tgcattatct ctgcatccct 601 ctgcttgcga gcagctgcgg aaagaccatc atccttcctg cccttgccat gctcattttg 661 cttcttggcg ttcttctggc gggcaagttc acgctggttt ctccagctgt taaagatggt 721 ctacaagttt gacca //