LOCUS       GH664934                 808 bp    mRNA    linear   EST 19-MAY-2010
DEFINITION  CBZA38365.b1 CBZA: Normalized channel catfish cDNA library from
            stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2,
            AUL_M) Ictalurus punctatus cDNA 5' similar to zebrafish RefSeq,
            XP_001919123.1, PREDICTED: similar to Small EDRK-rich factor 2
            (4F5rel) (h4F5rel) (Gastric cancer-related protein VRG107) [Danio
            rerio], mRNA sequence.
ACCESSION   GH664934
VERSION     GH664934.1
DBLINK      BioSample: SAMN00164693
KEYWORDS    EST.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Wang,S., Peatman,E., Abernathy,J., Waldbieser,G., Lindquist,E.,
            Richardson,P., Lucas,S., Wang,M., Li,P., Thimmapuram,J., Liu,L.,
            Vullaganti,D., Kucuktas,H., Murdock,C., Small,B.C., Wilson,M.,
            Liu,H., Jiang,Y., Lee,Y., Chen,F., Lu,J., Wang,W., Xu,P.,
            Somridhivej,B., Baoprasertkul,P., Quilang,J., Sha,Z., Bao,B.,
            Wang,Y., Wang,Q., Takano,T., Nandi,S., Liu,S., Wong,L.,
            Kaltenboeck,L., Quiniou,S., Bengten,E., Miller,N., Trant,J.,
            Rokhsar,D. and Liu,Z.
  TITLE     Assembly of 500,000 inter-specific catfish expressed sequence tags
            and large scale gene-associated marker development for whole genome
            association studies
  JOURNAL   Genome Biol. 11 (1), R8 (2010)
   PUBMED   20096101
COMMENT     Contact: Liu ZJ
            The Fish Molecular Genetics and Biotechnology Laboratory,
            Department of Fisheries and Allied Aquacultures and Program of Cell
            and Molecular Biosciences
            Auburn University
            203 Swingle Hall, Auburn University, Auburn, AL 36849, USA
            Tel: 334 844 4054
            Fax: 334 844 9208
            Email: zliu@acesag.auburn.edu
            cDNA library sequencing: DOE Joint Genome Institute
            (http://www.jgi.doe.gov)
            Seq primer: M13 Forward.
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /clone_lib="SAMN00164693 CBZA: Normalized channel catfish
                     cDNA library from stomach, muscle, olfactory tissue and
                     trunk kidney (mixed tissue 2, AUL_M)"
                     /note="Organ: mixed tissues from stomach, muscle,
                     olfactory tissue and trunk kidney; Vector: pDNR-Lib;
                     Site_1: Sfi IA; Site_2: Sfi IB"
BASE COUNT          263 a          155 c          181 g          209 t
ORIGIN      
        1 gttgcttcag gggaaaaaaa gagaaggggt taggcttcgc tttgcccgga cttaaaaagc
       61 atcgaaagac atgaccattt ggtctgacca gctatcagct tccaaaacac aagccgagct
      121 ggtcaaactg gtagaccatc tttaacagct ggaggaaacc agcgtgaact tgcccgccag
      181 aagaacgcca agaagcaaaa tgagcatggc aagggcagga aggatgatgg tctttccgca
      241 gctgctcgca agcagaggga tgcagagata atgcagcaga aacagaaaaa agccaacgag
      301 aagactgaca cgaagtcaaa atagccagtg gacacattgg gactagcatg cgtttttgca
      361 gtggttccca acattcaaca gcttgcggct cacgaaaagt tgtaaccata tagacagcta
      421 aaaatactat tactgactgg taatcagttg gagaaaatag tctacaatgt ggcttccgaa
      481 agatctgact tatgagggaa aatctttgag ttaagtaatg atctacccat tgttccagat
      541 atgatcagta cacgcaataa ttaaattatg atacgtaaat tggttgaatc gtatttttaa
      601 ctggttaaaa atatcgatgt gtaattccac cacgcgttaa acacaactgt gttactgata
      661 attcttggtt caaatgtcat gagattgcat cttaatcttc tgtcttttgt ctccttttga
      721 tttcaaatca ctttcgagtg tgtactagac atggagcaga tcattttaaa gaggggagac
      781 tgccagtcaa catatgaatt tgactttc
//