LOCUS GH664934 808 bp mRNA linear EST 19-MAY-2010 DEFINITION CBZA38365.b1 CBZA: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL_M) Ictalurus punctatus cDNA 5' similar to zebrafish RefSeq, XP_001919123.1, PREDICTED: similar to Small EDRK-rich factor 2 (4F5rel) (h4F5rel) (Gastric cancer-related protein VRG107) [Danio rerio], mRNA sequence. ACCESSION GH664934 VERSION GH664934.1 DBLINK BioSample: SAMN00164693 KEYWORDS EST. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 808) AUTHORS Wang,S., Peatman,E., Abernathy,J., Waldbieser,G., Lindquist,E., Richardson,P., Lucas,S., Wang,M., Li,P., Thimmapuram,J., Liu,L., Vullaganti,D., Kucuktas,H., Murdock,C., Small,B.C., Wilson,M., Liu,H., Jiang,Y., Lee,Y., Chen,F., Lu,J., Wang,W., Xu,P., Somridhivej,B., Baoprasertkul,P., Quilang,J., Sha,Z., Bao,B., Wang,Y., Wang,Q., Takano,T., Nandi,S., Liu,S., Wong,L., Kaltenboeck,L., Quiniou,S., Bengten,E., Miller,N., Trant,J., Rokhsar,D. and Liu,Z. TITLE Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies JOURNAL Genome Biol. 11 (1), R8 (2010) PUBMED 20096101 COMMENT Contact: Liu ZJ The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences Auburn University 203 Swingle Hall, Auburn University, Auburn, AL 36849, USA Tel: 334 844 4054 Fax: 334 844 9208 Email: zliu@acesag.auburn.edu cDNA library sequencing: DOE Joint Genome Institute (http://www.jgi.doe.gov) Seq primer: M13 Forward. FEATURES Location/Qualifiers source 1..808 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /clone_lib="SAMN00164693 CBZA: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL_M)" /note="Organ: mixed tissues from stomach, muscle, olfactory tissue and trunk kidney; Vector: pDNR-Lib; Site_1: Sfi IA; Site_2: Sfi IB" BASE COUNT 263 a 155 c 181 g 209 t ORIGIN 1 gttgcttcag gggaaaaaaa gagaaggggt taggcttcgc tttgcccgga cttaaaaagc 61 atcgaaagac atgaccattt ggtctgacca gctatcagct tccaaaacac aagccgagct 121 ggtcaaactg gtagaccatc tttaacagct ggaggaaacc agcgtgaact tgcccgccag 181 aagaacgcca agaagcaaaa tgagcatggc aagggcagga aggatgatgg tctttccgca 241 gctgctcgca agcagaggga tgcagagata atgcagcaga aacagaaaaa agccaacgag 301 aagactgaca cgaagtcaaa atagccagtg gacacattgg gactagcatg cgtttttgca 361 gtggttccca acattcaaca gcttgcggct cacgaaaagt tgtaaccata tagacagcta 421 aaaatactat tactgactgg taatcagttg gagaaaatag tctacaatgt ggcttccgaa 481 agatctgact tatgagggaa aatctttgag ttaagtaatg atctacccat tgttccagat 541 atgatcagta cacgcaataa ttaaattatg atacgtaaat tggttgaatc gtatttttaa 601 ctggttaaaa atatcgatgt gtaattccac cacgcgttaa acacaactgt gttactgata 661 attcttggtt caaatgtcat gagattgcat cttaatcttc tgtcttttgt ctccttttga 721 tttcaaatca ctttcgagtg tgtactagac atggagcaga tcattttaaa gaggggagac 781 tgccagtcaa catatgaatt tgactttc //