LOCUS FX553726 5063 bp mRNA linear TSA 01-AUG-2015
DEFINITION TSA: Allium fistulosum mRNA, contig: AFU_00001.
ACCESSION FX553726
VERSION FX553726.1
DBLINK BioProject:PRJDB863
Sequence Read Archive:DRR006298, DRR006299, DRR006300, DRR006301,
DRR006302, DRR006303, DRR006304, DRR006305, DRR006306
BioSample:SAMD00008822, SAMD00008823, SAMD00008824, SAMD00008825,
SAMD00008826, SAMD00008827, SAMD00008828, SAMD00008829,
SAMD00008830
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Allium fistulosum (Welsh onion)
ORGANISM Allium fistulosum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Amaryllidaceae; Allioideae; Allieae; Allium.
REFERENCE 1 (bases 1 to 5063)
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J., Shigyo,M. and Wako,T.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hikaru Tsukazaki
Institute of Vegetables and Tea Science, NARO, Vegetable Breeding
and Genome Division; Ano-Kusawa 360, Tsu, Mie 514-2392, Japan
REFERENCE 2
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J.A., Shigyo,M. and Wako,T.
TITLE Development of transcriptome shotgun assembly-derived markers in
bunching onion (Allium fistulosum )
JOURNAL Mol. Breed. 35, 55 (2015)
REMARK DOI:10.1007/s11032-015-0265-x
COMMENT URL:http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/index.jsp
##Assembly-Data-START##
Assembly Method :: Velevt v. 2.0
Sequencing Technology :: 454 GS FLX; HiSeq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5063
/cultivar="Ki"
/db_xref="taxon:35875"
/mol_type="mRNA"
/note="contig: AFU_00001"
/organism="Allium fistulosum"
/tissue_type="mixuture of 2-weeks seedlings, leaf, roots,
basal meristem, immature flower bract, mature bract
(about 1 week before anthesis), opened flowers, immature
fruits and sliced pseudostem"
BASE COUNT 1669 a 853 c 1078 g 1463 t
ORIGIN
1 aagaaagagg cacccgaccc gttaaagacc cgaaaccaaa aaagttcatc aatgaatcat
61 gattctgaaa attatccaaa ctcccgccaa gacatcactc attaatttgg ttttccctcc
121 tatttctttc ctgtttatgt atttcgcaaa taaatcttca tcttttggat caattcattt
181 cctcagttta gcgctgccgg ttttacccct ttctctctct tcgactagct gcagtttgtt
241 ctcgaggcac agttatcatg gttggaagag ctgaacgacc aacaggttta aaaagtaaag
301 cgtccaatat atctcaatca aagaaaagaa aacacaacga caaggccaaa attgaaaatg
361 tcacaaatgc tgcttcaaat cctacttctg acatggaaaa tagtaatggg tgttcgctcc
421 ctaaaaggcc aaaaagggct gcagcttgtt cagattttaa agaaaaaact gtcaaattat
481 ctaaaagttc catagttcgt gaaacaaaaa aacccgtata gttgaagatg aattagttgc
541 tgtggatctt accaaacttg gtcctgaaga gtctcctcca tgcagaaagc ttcttgactt
601 tatttttcat gatgaaaatg gagctccaca atctttcgaa atgtgtgaat ttgatgatac
661 attcataact gctctcataa tgcctttgga tgatgatctg gaaaaagaaa aaaataaagc
721 cgtgagatgc gaaggatttg gtcgaattga agattggtcc atttctggtt acgatgaagg
781 gactccagtg gtatgggttt caacagaaat tgcagattat gaatgtgtta aaccagcaag
841 caattataga aaattttacg atcattttta caacaaagca cacgtttgtg ttgaagttta
901 taggaagctg gcaaaatctg ttggtggaaa tccaactttg actcttgatg cattagttgc
961 tggtataatt cgtaccctaa atggaactaa gggcttctct agtggcacaa tcactaaaga
1021 ttttgtgatt tctcttggtg aatttgttta taatcagtta gtaggacttg atgaaacatc
1081 tatggacaac ggtaccagtt tatcaactac acctgctctg attgctttaa gagatgagtg
1141 cagaagcaga tcacaatcaa ttccaaggac aaccaatatt tcgaatggaa gtttaaagat
1201 taaggaaggt gaaatatcgg aagacaatga agacgaggat gcaaaattag caagactatt
1261 acaaagtgag gaagactgga atgcgatgaa gcaacagaga ggtcgtcatc ctccctccaa
1321 aaagagcact tatattaaaa tcagtgaaga tgaaattgca aacgattacc ctttacctgc
1381 atactacaag ccctccgttg aagaaatgga tgaatacata ttttttgacg atgagagtag
1441 catgtcctat tttgaccttc ctagaagagt tcttaataac tgggcacttt ataatcccga
1501 ctcacgtttt atttcgttgg agttattgcc aatgaagcca tgcgctgaaa tcgatgtgac
1561 catttttgga tcgggaacta tgaaagaaga tgatgggagt gggttttgtt tagaaaacga
1621 tgtgggtcag tcatctggtg catccgactc aatgaatatt gatggggtac caatatattt
1681 gagtgcaatc aaggaatgga tgattgagtt tggtgcatct atgatctttg tttccattcg
1741 aactgatgtg gcatggtata ggctcggtaa accgacaaaa caatatgctc tgtggtatga
1801 accaattctc aaaactgcaa ggcttgcggt tggtatcata accttattga aagaacaaag
1861 cagagtatca aaactttctt ttaatgacgt gataaagaaa gtctctgaat ttgagaagga
1921 ccaccctgct tatatttcgt caaatatgca agcggtggaa agatacgtgg ttgtacatgg
1981 gcaaattata cttcaacagt ttgatgatta tccagaccag actatcaaga agagtgcctt
2041 tgtttctggt ctttctgtaa aaatggagca aaaacaccac acaaaacttg tgatgaagaa
2101 aaacactgtc ataaagaaag aggctaactt gaatccaagt gcttcagtgc ggccaatagt
2161 atcccaaaga aaagcaatgc gtgctactac cacaaagctg gttaatagag tatgggctac
2221 ctactattca aatttgttcc ctgaggatac taaggaagac aatgaggaaa ccaaagtaga
2281 agaaactgaa gaagaacaag aggagaatga tgaagaagtt gaagaagaga acaacatact
2341 tgaagaagtt caaactaaaa cttccaagtc ccgctcttgt acaaagtctc ataaaacaaa
2401 aaatagtaat ggcacaaatt gggaaagcaa agcaataggc aaaactgatt cccgagagtt
2461 tctttatggg tctgcgatag ttaatggaaa aactattgca gtaggtatgt ctgtcattat
2521 tgaagctgaa aattcagatg gattagatga tctttttttt atagagtaca tgtttgaaaa
2581 agctgatggc tctagaatta ttcatgggcg gcaattgctt agaggatctg aaactgtttt
2641 aggaaatgct gctaaagagt cagaactatt cttaaccaat gattgtacag aatttgaatt
2701 agaggatgta aaaggaactg tagctgtaaa tatccgtaaa agactatggg ggcataagta
2761 taggaaagaa tatatagaag ctgataaact tgatactgta aaagcagaag aaagaaaaaa
2821 gaaaggcctt ccaatggaat acttctgtaa atgtgtatac agtccagaga aaggtgcttt
2881 tattacagct ccatttgatt ctttaggact tgggactgga gtttgcaact catgtaaaca
2941 aagagagaat gaagatgatg aatttagttt aacatctgac aatagtttca tttacaagaa
3001 aattaagtat aatgtcctag attttatata cgttgcccca catttctttg aaaaaggaaa
3061 gggaattgag catggaatat ttaaatctgg tagaaatgtg ggattgaaag cttatgttgt
3121 atgtcaaata ttagaaatta ttggttccac tggatcgaaa aaatctaaac aagaatctat
3181 ggaattgaaa gtaagaagat tttatagacc agaagacatt tctgcaacaa aggcctatag
3241 ttctgatatt agagaagtgt actatagtga agatactctc actgtgccca tggaaatatt
3301 agaaggaaag tgtgaagttc ggaagaaaac tgaacttccg gaattggagc ttccttttgc
3361 cactgatcat attttcttct gtgaatatct ttatgattcg tctaacggat ccattaaaca
3421 gttgccctcc aatattaaac cctggtctca gattaagaag actaacagtg tctctaagaa
3481 aaataaaggg aagggaaaac gtatagaagg agatcaagat catattcaaa gaaacgggaa
3541 gactcaagag aatcaattgg ttactcttga tatttttgct ggctgtggtg gtttatcaga
3601 gggactgcaa cagtcaggcg tgtcacatac aaaatgggcg attgaatatg agcagccagc
3661 tggtgaagca tttagacaga atcatcctga tgcatttatg attatagata actgcaatac
3721 cattttaagg gctataatgc aaaaatgtgg tgatgcagat gattgcatct caaccgctga
3781 ggctaacgag ttagctgaaa agcttgacga ggatgtgatt gataaacttc ctgtgcctgg
3841 tcaagttgat tttattaatg gaggaccgcc gtgtcaggga ttttcaggaa tgaatcgatt
3901 cagccatagt acttggagta aagttcagtg tgaaatgatt ttggcttttc tgtctttcgc
3961 cgaatatttc aggccaagat attttcttct agaaaacgtc aggaattttg tatcatttaa
4021 caaaggggag acctttcgct tgactcttgc ctctctttta gaaatgggat accaggtgag
4081 atttggtata ttagaagctg gagcatatgg agtatctcaa tcaaggaaaa gggcgtttat
4141 ttgggctgct tctccagaag aaatactgcc tgaatggcct gagcccatgc atgtattcaa
4201 cagtcccgag ttaaagattt ctcttgataa agggacctat tatgctgcag ctcgtagtac
4261 tgccagtgga gccccgtttc gttctattac tgttagagat actataggcg accttccacc
4321 tgttggaaat ggagcatcca agccttcaat tgattataat ggtgatccag tgtcatggta
4381 ccagaagcaa attcgtggca gcatgactgt cctgaacgat cacatttcaa aagaaatgaa
4441 tgaactgaat ctcattcggt gtcaacgcat tccaaagtgc ccaggttctg actggcgcga
4501 tctccctgat gagaaggtaa aattatcatc tgggcaaaca gtagacctaa tcccatggtg
4561 tttgccgaac acagcgaaga ggcataatca atggaagggt ttgtttggaa ggttagattg
4621 ggaaggaaac tttcctacat cgatcactga tccacaacca atgggcaaag ttggaatgtg
4681 ctttcaccct gatcaggaca ggatccttac tgtccgtgag tgtgctcgat ctcagggatt
4741 tcgagatagc tatcaatttt atgggaatat tcagaataaa cacagacaga ttggaaatgc
4801 tgtgccacct ccacttgctt atgcattagg gaggaaactc aaggaagtcg tggatgcaaa
4861 tattccttca tattgaattt tgttctttaa ttctggtgtg ttgcaaacta tactattagc
4921 attgagcttc catttttaaa actggaaatt ttcatctcac tgtaaaatta ttttaagttg
4981 caaactttgt aacctacatt tctgagttgt aatcttgtga aaaatattaa gtgatgatgg
5041 taataacatg ttattcatag tta
//
LOCUS FX553727 4631 bp mRNA linear TSA 01-AUG-2015
DEFINITION TSA: Allium fistulosum mRNA, contig: AFU_00002.
ACCESSION FX553727
VERSION FX553727.1
DBLINK BioProject:PRJDB863
Sequence Read Archive:DRR006298, DRR006299, DRR006300, DRR006301,
DRR006302, DRR006303, DRR006304, DRR006305, DRR006306
BioSample:SAMD00008822, SAMD00008823, SAMD00008824, SAMD00008825,
SAMD00008826, SAMD00008827, SAMD00008828, SAMD00008829,
SAMD00008830
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Allium fistulosum (Welsh onion)
ORGANISM Allium fistulosum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Amaryllidaceae; Allioideae; Allieae; Allium.
REFERENCE 1 (bases 1 to 4631)
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J., Shigyo,M. and Wako,T.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hikaru Tsukazaki
Institute of Vegetables and Tea Science, NARO, Vegetable Breeding
and Genome Division; Ano-Kusawa 360, Tsu, Mie 514-2392, Japan
REFERENCE 2
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J.A., Shigyo,M. and Wako,T.
TITLE Development of transcriptome shotgun assembly-derived markers in
bunching onion (Allium fistulosum )
JOURNAL Mol. Breed. 35, 55 (2015)
REMARK DOI:10.1007/s11032-015-0265-x
COMMENT URL:http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/index.jsp
##Assembly-Data-START##
Assembly Method :: Velevt v. 2.0
Sequencing Technology :: 454 GS FLX; HiSeq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4631
/cultivar="Ki"
/db_xref="taxon:35875"
/mol_type="mRNA"
/note="contig: AFU_00002"
/organism="Allium fistulosum"
/tissue_type="mixuture of 2-weeks seedlings, leaf, roots,
basal meristem, immature flower bract, mature bract
(about 1 week before anthesis), opened flowers, immature
fruits and sliced pseudostem"
BASE COUNT 1324 a 998 c 982 g 1327 t
ORIGIN
1 ggctgcccct atttatttag actggaatat ttatactgga actggaccga caaccaaagt
61 aaattccctc tcgattaagg tcattcccaa gggctgcagg agaactccaa ctaaagatgg
121 gcttagaact taaacgaact tttggcaaag aacaggttaa gaccttagga ctttaggaca
181 ggggacggat acgaagtcta ctagatgagg gactggtggg ccatggcagg aggaaaaact
241 gttacggaca ctgaaactcc cctgtctctt aaacaccttc tgacattgct tctggaatag
301 ttcaacaatt aatttattat ttggaggtct cgattgagac cactgctggc ttgctagact
361 catagctgcc agagaatcta caattccgtg gttcgccttt gcagccaatg ttatatagga
421 gtcatatgga ataataatac cttccctcca ctagcctgat aacgttctcc ttggtctgcg
481 ttctaagcca tagaatcgta attccttact gatctctcat tcaattaatt actggacttt
541 ccgaatgaat atctggggct cctattagag acaagcaaga tatttttgta tataaagact
601 agactagtct gatttagtac gagtttcgga ataatcctgg gcatcgatct cctaatagag
661 acaatatgaa agacgtctcg tacgagacta gtatctccgt ttgtgttcgc aactcattca
721 tgatgaaaga gcgggtttga acaaccagca aatccataca tggctaacgt gccttgggga
781 gagagggaga gtccaatcta ttcttctctg cccaagcccc gaggggttcg catagtcggg
841 ttaccagctg gcatagtata ttcccgtgat tgaatcattg attggctact ctttctggtt
901 caatcacaaa gtaagtccac cgtcgagtag tccgaaatgg gaacggctcg gattggtatt
961 tgtgagagaa tcattgactg aaagccagat gcgatgctta acacattctg ggtaaagtta
1021 gttttcaaag tataaggaaa taggatgcgt tatgcttaac acatgtgaag aaagattgta
1081 gcacatagtt cggaactgat cttcccattt ctgaggtcag actttcccct gagaaaatgc
1141 actacttagt gctctagctg gactaaaaag ttcgttagaa tccggtcagg agcaacatcc
1201 ttctaagagt ttcatagagc gatcagcacc gatcgagctt gaaacgagag aatggagacc
1261 aaagatgccg accagtctaa agaaagagct ggcataacaa agaagtctag ttatgctaaa
1321 cacatcggaa tcgaagtagt ttcatccgct tggaaccaac tccccctggg aaaagaaatg
1381 gatttgacga tgcatctgta caaggagttt tcattgaatc tggtccaaaa cctagccaga
1441 agagataaag aagcgctctt gacctgatga aagaagcccc ccaaaaacat aggactttgg
1501 catggaatcc gccaatagtt tggagttata atgaatccat cttctctgtt gaggaaggac
1561 cttatgcttc acacaggtct agcgaagtac ttcccatttg gaagggctcc gactctctct
1621 tcgaaagcgc tttccttagg agcgaattct accactttga cgcataagtg aaagagaggt
1681 gtcaagcggt ccaaaataga gtgatctaaa atagctaata ataaggagtg aacattgccg
1741 atttggctca caaagcgaga ggaatcaaag gcggaggcat attggcaagc acctccctgg
1801 ttgctcgtcc ttcacacaga ttcagaatgc tcctttgatc agccctggta aatgtggaaa
1861 ttcactaact tttgcactag tccagatgca aagaattgat aaaagctgag ccatctagga
1921 ccctagatta catagagtct agttgatcaa tcaggtccaa tcatgcttaa aaagagagat
1981 ttgctgtcaa agatcacgag gcaagtaaac ccgcaactct ttccatatgc ggggagataa
2041 tactcaaata taaataaact aagtaaagtc actctcctta tttgaatgga ataagcgagt
2101 gaaagtgact aggtaggccg aacttgaccg atgattgggt gagaccgctt cttgtctttc
2161 gctacgcacc ttctcggcta gctcgaactc atatggtcca ttgtccttga aactctcatc
2221 tgcgcctctg gtcttgaaag caatctcctc tggaaagcca tcactcaggc acaggaatag
2281 gtttggaacc ctctatccgt ctctctcaag ccatttgaaa agtaagctga tccgtccatc
2341 ttctgtctca agcaagtaag ttagtcactc ggaatccatt ggccaattaa gattgccgca
2401 gatgaagatc tttcattccg tgctttgtcc ccctatgtag taagtatgtg gtacctgcga
2461 atgcttatgg aattagagct cggtaagctc tggtctaact agtttcttct tgctacccta
2521 tcaccctaaa tctaagcgcc gggcaaggca cgcaatctca gacgtcagaa tctcttctta
2581 tctgatattc gaagcaagga catgttgatc tgtctttatc taccagatag cctcatcttt
2641 cccccctccc cggattcgat gcatctaggg ttttagagag gctttgtgcc ccccttttat
2701 attggtgcta tctttactga ggtttttact acctattcac tctgcgtaga ttgcgcggaa
2761 agagaagtca atttttatgg aagactaggg attgctaatc tgcctacgcg ggaagcctga
2821 gagggagaag gctttctgca gtttgataat ctcaaccttg acctcgaata agctctttga
2881 tgcaagtgaa gaagaatgct tgagattcca agtaagggca ttctctcctg agctaggcat
2941 cggacttctt tcgggggttc cttagggacc gattcacaaa tgtaagggta gattgcgcag
3001 aaagaagcct tatagaatct gtgtctttga cttctctata tatatgaaga atgcccaaat
3061 taaaaattaa taagtaaggg gattataaat gattgatttg ttgatttaat tcgaattatt
3121 cataaatctg aattcgtaaa agaaataatt aagtttgcct agttcaaatg cgcttttgcc
3181 tcgtgaaatg aatttggaaa tgcctcataa ttagtttcct cccaatgtac tttttcccta
3241 gtaaaacaaa aggaatttct ttatttaatt atttcattag gaattgtgca ttatcaagcc
3301 agagaaagag ggggtcgggt tgaccagaaa gtctttcctg ctgctgccga ggctgctgat
3361 gccacttcct tcctctgcgg tttgttccgc cgattcgacc ctcttctgta gcacgacttc
3421 ttcagattca cttagttctg attcgacccg cctgctgaca cgactgcttc agattgttct
3481 tcttatttgc tttgccagct gctgggacta cttctgatga ctttccgcct ccgcttacac
3541 tgcagatgaa cttcgttctg cccctatcaa atagaaatgg acccgttgga acgacttccg
3601 atgatgaact acttgatgca ctcgctgaca ctgcttcttc agattcgctt agttcttccc
3661 tagctgggac tgcagatgaa ctttcttctg attccgcccc cgcggacact gcttcttctt
3721 cttcacgaag ttatgcccca ttaatagaag ggaatcccgg ccagacaagc taactaatcc
3781 aaacttaacg aggaacttag ggggctttat gtgcatcctt tcaagaggtt tctgactcag
3841 tcctgaactg cttcccccta gggagattgg aaaattcgtt cactttcgca gctatatgtt
3901 tcgctaagtt gatgacaaaa tccgggataa tccgagctca ttttcactaa ttgcataata
3961 tatgtaaaat tgataaatcc tgaaaaactg gacaaaatca tccaaaaaag ccggaaagta
4021 gcaaagcctc atccgaacac atgtattatg cgtaacaaaa gaaaggataa gttggctgac
4081 ttaattgatt aggttctctc aactttgact ttattgtgtt aagcataacg ctagcgaaag
4141 aaagaaaaga gaaattcatt gctgttttcc gggatttttg gcatgattta gttggttttg
4201 agggatattt caaaatgacc tattatagga aattcatgat ttttcgtgtc aatttgacat
4261 gatttaagct ccaagtttgc gtttcatata gctgcaaaag tcatgatttg attgatgaac
4321 aacgcgcttc gctcctaaga aataagatag tctatctggc aagatcgaaa gataaaaaat
4381 tccattactt ggcatattag gtaggaaatc tgctttctcg ctgaaggaac tctccccgcc
4441 cggatggagt agtgaatgga atgacccaat ctttctttcc aaattcccaa tttgactctc
4501 ccacttttag gtaactatga cgaatcctaa atttccagac caagtttcag tgcaaagttc
4561 cagagaagaa aaagaaatgg acgttgagac tccccagccg taatggccac tctgcgttga
4621 taccactgct t
//
LOCUS FX553728 4593 bp mRNA linear TSA 01-AUG-2015
DEFINITION TSA: Allium fistulosum mRNA, contig: AFU_00003.
ACCESSION FX553728
VERSION FX553728.1
DBLINK BioProject:PRJDB863
Sequence Read Archive:DRR006298, DRR006299, DRR006300, DRR006301,
DRR006302, DRR006303, DRR006304, DRR006305, DRR006306
BioSample:SAMD00008822, SAMD00008823, SAMD00008824, SAMD00008825,
SAMD00008826, SAMD00008827, SAMD00008828, SAMD00008829,
SAMD00008830
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Allium fistulosum (Welsh onion)
ORGANISM Allium fistulosum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Amaryllidaceae; Allioideae; Allieae; Allium.
REFERENCE 1 (bases 1 to 4593)
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J., Shigyo,M. and Wako,T.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hikaru Tsukazaki
Institute of Vegetables and Tea Science, NARO, Vegetable Breeding
and Genome Division; Ano-Kusawa 360, Tsu, Mie 514-2392, Japan
REFERENCE 2
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J.A., Shigyo,M. and Wako,T.
TITLE Development of transcriptome shotgun assembly-derived markers in
bunching onion (Allium fistulosum )
JOURNAL Mol. Breed. 35, 55 (2015)
REMARK DOI:10.1007/s11032-015-0265-x
COMMENT URL:http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/index.jsp
##Assembly-Data-START##
Assembly Method :: Velevt v. 2.0
Sequencing Technology :: 454 GS FLX; HiSeq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4593
/cultivar="Ki"
/db_xref="taxon:35875"
/mol_type="mRNA"
/note="contig: AFU_00003"
/organism="Allium fistulosum"
/tissue_type="mixuture of 2-weeks seedlings, leaf, roots,
basal meristem, immature flower bract, mature bract
(about 1 week before anthesis), opened flowers, immature
fruits and sliced pseudostem"
BASE COUNT 1110 a 943 c 1322 g 1218 t
ORIGIN
1 tggccgagaa cataaattgg ttgtggtcgc ggtggcatgt gagtggttgt aggtgtgttt
61 tattgttggg ctccctgttt tgttgcagcc aaccaatgat aaaccaccat tttcgtactt
121 ggagcttgag attcgatatg tgcgttgttg ccttctaatg atactaaaag ggaattggtc
181 gtttcttacc tgtttcgtcg tccctcaccg tgccttgtgg tgatgcgggg gatgaccaat
241 ggttgtacct tctttggcgt tgatcgacga tgttatttgt cgttggtgaa gttggtcatt
301 gagtggttcc aaagttttat ggatatggcg tattggttaa gatttcaagg gtgggtccct
361 tgtttgaatc caaattgtat ctcggtttgt ccgcactttg tgaaaagaca tcgcaagatt
421 gtgtcgtcat ctcttttagt taagagtgtg tgcgtcatat tgtcggtgcc tttaaggacg
481 tgctacctgg ttgatcctgc cagtagtcat atgcttgtct caaagattaa gccatgcatg
541 tgtaagtatt aacaaattca gactgtgaaa ctgcgaatgg ctcattaaat cagttatagt
601 ttgtttgatg gtacgtgcta ctcggataac cgtagtaatt ctagagctaa tacgtgcaac
661 aaaacccgac ttttggaagg gatgcattta ttagataaaa ggctgacacg ggctttgtcc
721 gatgctttga tgatttcatt ataacttgac cgatcgcatg gcctttgtgc cagcgacgca
781 tcattcaaat ttctgcccta tcaactttcg atggtaggat agaggcctac catggtaatg
841 acgggtgacg gagaattagg gttcgattcc ggagagggag cctgagaaat ggctaccaca
901 tccaaggaag gcagcaggcg cgcaaattac ccaatcctga cacggggagg tagtgacaat
961 aaataacaat atcgggctct tagagtttgg taattggaat gagtacaatc taaatccctt
1021 aacgaggatc cattggaggg caagtctggt gccagcagcc gcggtaattc cagctccaat
1081 agcgtatatt taagttgttg cagttaaaaa gctcgtagtt ggactttggg tttggtcgtc
1141 aggtccgcct ttgacgagca cctgacgtcc tgtccctttt gccgacgtta cgaatctggc
1201 cttaattggt tgggtcgtgc cttcggcgtt gttactttga agaaattaga gtgctcaaag
1261 caagcctacg ctttgtatac gttagcatgg gataacatca caggatttcg gtcctattgt
1321 gttggccttc gggatcggag taatgattaa gagggacagt cgggggcatt cgtatttcat
1381 agtcagaggt gaaattcttg gatttatgaa agacgaacaa ctgcgaaagc atttgccaag
1441 gatgttttca ttaatcaaga acgaaagttg ggggctcgaa gacgatcaga taccgtccta
1501 gtctcaacca taaacgatgc cgaccaggga tcaacggatg ttgcttttag gactccgttg
1561 gcaccttttg agaaatcaaa gtttttgggt tccgggggga gtatggtcgc aaggctgaaa
1621 cttaaaggaa ttgacggaag ggcaccacca ggagtggagc ctgcggctta atttgactca
1681 acacggggaa acttaccagg tccggacata gtaaggattg acagactgag agctctttct
1741 tgattctatg ggtggtggtg catggccgtt cttagttggt ggagcgattt gtctggttaa
1801 ttccgttaac gaacgagacc tcggcctgct aactagctac acggagtcat cccttcgtgg
1861 tcagcttctt agagggacta tggccgctta ggccatggaa gtttgaggca ataacaggtc
1921 tgtgatgccc ttagatgttc tgggccgcac gcgcgctaca ctgatgtatt cagcgagtct
1981 aatcctttgt cgatagacat gggtaatctt tgaaaatttc atcgtgatgg ggatagatca
2041 ttgcaattgt tggtcttcaa cgaggaattc ctagtaaacg cgagtcatca gctcgcattg
2101 attacgtccc tgccctttgt acacaccgcc cgtcgctcct accgattgaa tggtccggtg
2161 aagtgtttgg atggtggcga tagaggtggt tcgccgcctg tggcgtcgcg agaagtccac
2221 tgaaccttat catttagagg aaggagaagt cgtaacaagg tttccgtagg tgaacctgcg
2281 gaaggatcat tgtagagttc cttttcgaac aactgcgaat ttgtactctt acccgtcgag
2341 aactacgtat ttgtgtggtt agcacttgcg ttgtttggat gggttccatt tgctgccttc
2401 atctttgctt caattgaagt aagaagtaga gtagaaataa gaaaccggca cggtttgtgc
2461 caaggacagt tgttgttgga gagcatgcca tcattttgat gtgctttgtg ttattccagt
2521 gagcgtctaa atgactcctg gcaatggata tcttggctct cgtgtcgatg aagaacgtag
2581 cgaaatgcga cacttggtgt gaattgcaga atcccgtgaa ccatcgagtc tttgaatgca
2641 agttgcgctc gaggccgtta ggttaagagc acgtctgttt gggcgtcatg ccttgcgtca
2701 ttctaaccac ccacctacgg taaacttaca ctgtgagtga tggcggatgt ggagattgac
2761 cctccgtgcc ttaattgtgc ggttggttta agtgaatgtt gtcgttaggt ctacgcgcgg
2821 cgaatggtgt atcgagttaa cacacgatgt ctctaactgc gtccaggagt cctacgcacg
2881 atgtaacact aactgaaacc aatttcgacg tttgccttag ttgcaagctc ggaacatgac
2941 ctcagatcag gtggggcaac ccgctgagtt taagcatatc aataagcgga ggagaagaaa
3001 cttacgaaga ttcccttagt aacggcgagc gaatcgggaa aagcccagct tgagaattag
3061 gtggttgtgc cacctaaatt gtagtctgga gaagcgtcat cagcgacgga tcaggcctag
3121 gtcccttgga aaggggtgcc agggagggtg acagccccgt ccggcttgaa ccttgctgca
3181 acatgaggcg ttgtcgatga gtcgggttgt ttgggaatgc agccccaatt gggtggtaaa
3241 tttcgtccaa ggctaaatag cgacgagaga ccgatagcta acaagtaccg cgagggaaag
3301 atgaaaagga ctttgaaaag agagtcaaag agtgcttgaa attgtcagga gggaaacgaa
3361 tgggggtcgg cgatgcgtgc tggtttgatg ttgaactact cacaccttgg gtaggttagc
3421 cacttggctc ggcacgtgga tcgttgcggg ctgtgcttgc ggtccaagcc ttgggcattt
3481 gatttgcttg aggtaacgtc gtcggtgcag tcgaggatac agtgcacgct tcaatggcgc
3541 gtcctttgcg gcgcacttgt gcgctcctag cactgtctag tgggctcccc attcgacccg
3601 tcttgaacac ggaccaagga gtctgacatg catgcaagtc gatggggtgt gaaaactcgg
3661 aaggtgtaag gaagctgatg ggtgggatct cctttgtggg gtgcaccgcc gaccgacctt
3721 gatcttttgt gaagggttcg agtgggagca tgcctgtcgg gacccgaaag atggtgaact
3781 atgcttgagc ggggcgaagc cagaggaaac tctggtggag gctcgtagcg atactgacgt
3841 gcaaatcgtt cgtctgactt gggtataggg gcgaaagact aatcgaacca tctagtagct
3901 ggttccctcc gaagtttccc ttaggatagc tggagctcgc gtgcgagttc tatcgggtaa
3961 agcaaatgat tagaggcatc aggggcgtaa cacccttgac ctattctcaa actttaaata
4021 ggtaggacgg tgcgactgct ttggtgagcc gtgccacgga atcgagagct ctaagtgggc
4081 catttttggt aagcagaact ggcgatgcgg gatgaaccgg aagccgggtt aaggtgccca
4141 actgtacgct aacctagaac ccacaaaggg tgttggtcga ttaagacagc aggacggtgg
4201 tcatggaagt cgaaattcgc taaggagtgt gtaacaactc acctgccgaa tcaactagcc
4261 ccgaaaatgg atggcgctta agcgtgctac ccacactcgg ccatcgaggt ggttgccatg
4321 cctcgatgag taggagggcg cggtggttgc tgcaaaatct aaggcgtgag cctgggtgga
4381 gcggccatcg gtgcagatct tggtggtagt agcaaatatt caaataggaa ctttgaaggc
4441 cgaagagggg aaaggttcca tgtgaacggc acttgcacat gggtcagccg atcctaaggg
4501 acgggggaaa cccgtaaaag agcgcattga tgcgcgagct ccgaaaggga atcgggtcaa
4561 aattcccgag ccaggacgtg gtggcagacg gcc
//
LOCUS FX553729 4420 bp mRNA linear TSA 01-AUG-2015
DEFINITION TSA: Allium fistulosum mRNA, contig: AFU_00004.
ACCESSION FX553729
VERSION FX553729.1
DBLINK BioProject:PRJDB863
Sequence Read Archive:DRR006298, DRR006299, DRR006300, DRR006301,
DRR006302, DRR006303, DRR006304, DRR006305, DRR006306
BioSample:SAMD00008822, SAMD00008823, SAMD00008824, SAMD00008825,
SAMD00008826, SAMD00008827, SAMD00008828, SAMD00008829,
SAMD00008830
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Allium fistulosum (Welsh onion)
ORGANISM Allium fistulosum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Amaryllidaceae; Allioideae; Allieae; Allium.
REFERENCE 1 (bases 1 to 4420)
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J., Shigyo,M. and Wako,T.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hikaru Tsukazaki
Institute of Vegetables and Tea Science, NARO, Vegetable Breeding
and Genome Division; Ano-Kusawa 360, Tsu, Mie 514-2392, Japan
REFERENCE 2
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J.A., Shigyo,M. and Wako,T.
TITLE Development of transcriptome shotgun assembly-derived markers in
bunching onion (Allium fistulosum )
JOURNAL Mol. Breed. 35, 55 (2015)
REMARK DOI:10.1007/s11032-015-0265-x
COMMENT URL:http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/index.jsp
##Assembly-Data-START##
Assembly Method :: Velevt v. 2.0
Sequencing Technology :: 454 GS FLX; HiSeq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4420
/cultivar="Ki"
/db_xref="taxon:35875"
/mol_type="mRNA"
/note="contig: AFU_00004"
/organism="Allium fistulosum"
/tissue_type="mixuture of 2-weeks seedlings, leaf, roots,
basal meristem, immature flower bract, mature bract
(about 1 week before anthesis), opened flowers, immature
fruits and sliced pseudostem"
BASE COUNT 1052 a 1029 c 740 g 1599 t
ORIGIN
1 agattcatga aactactgca ttatagaaca tgatttgata catatgatac aaatcacaag
61 tttaaaagta ctcccagcaa acgaactaat taaacacttt cctagaaagt attcctcaga
121 tatttattca acaattccgg aacaaagcga acacaacaaa atctaggcat cttgcagata
181 aacagcacgg attgtactta tgaaactaaa gagatcataa ttcggttaat ttcacaagct
241 tcttgtagaa aatacggttg tccattgcag tattactttc taaaagagca cactgtacca
301 gctccttgac atctctgtaa gaaagaaaca tgcccaagtt atgaagcagg catcgcaaat
361 cttcaacctt gatataaccc acacggttgt aatcaaaaaa tctgaatgcc tgaagtaatt
421 ctttatcata aacaacatca actgtggaat cagatttaac acacttatct gatttctctg
481 ccttgagttt ggcatctact tttgcagcct tatcagcact ttctacttca gaattggatt
541 tctcagaaac cgcattagca ttatccttta tggctaaatt gttgtccatt tttgttccat
601 cagcaacatc tttcatttcc tcgtcgtttt caacattttc ttcaggttct tcatcctcat
661 caggttcttt ttcattttcg ttttcaatgt tttcttcagg ttcttcatta tcatcttcaa
721 tatcttcttc aggttcttca tcttcatctt cattgtcatt gttactatta ttaccatctg
781 atttgttttt accattgtct tctacatttg tattaccatt ttctgatttg tcttcatttt
841 tttgttcatt atcttcagcc tcacccatct gtacatcacc actctgatct ttggtgcctt
901 gtttttttga atttgtagat tgatttctat tcttagttcc ttcagacaat ttacgctgtt
961 tgggtgaaga actattgtta tctttctcgg acttttcatc tctctgtctc ttgcgctgat
1021 tcttttttgt gatacttctc ttgcgcaatt tctgaagaaa cgataaaagg cagcaagcca
1081 tttgatactg tagcatctca ttgaatgcct cagcaaatac tgacagctca aatgtggact
1141 cctctatgtc tttgtcattg taatccaaaa gcccgcccaa tgaaagggac attgatcgaa
1201 ttttagatcc tttatccctt tttgtttgca aaaataatcc agggcattct ggtggttcat
1261 caagtttctc tttctccttt atttcttttt gttgcttatt atctttactc ttcttctctt
1321 tatcatcttt tgtcttttct ttctttttac tgccaccagt tttctccaaa tctttgtctg
1381 ctgattctga tacaggattt tgttcattta tcttgctctc cttaatatcc ttctcatctt
1441 tttctttctt tccaattgaa ctactctttt ctgagtctaa aacttcctct tcctttgctt
1501 ctacttttat taactctctc tcttccttta tctccacttt taactcatta tcttccttta
1561 ttttggcttc tttctcttcg gttccagctt ccttcttgac aggaactttt ttctttatta
1621 ctcttctaat aattttcttc tttccctttg ccttagttac agtttcttga gcattaggag
1681 tttcattaga ttccttcagc atactatttt cttcttgatt gtctgctttc acttctggtt
1741 taacagatgg tgacttctta acatctttct ttccagcaga tgtcattggt gggagtacag
1801 gagtgacttc ttgattggca tccttatctt ccttagcttc tttagtttct tgcttaccag
1861 cagttttacc ttttatgacc cgcttgataa tttttctctt tactgttgtt tttggtttgt
1921 tatcttcaac agtaatttta ttgtcatcgg catttacctc tttcggttct tcaataagaa
1981 gttcctttcc tttctcacaa atagcattct cttccgaaga gtttttgggg gtgcgatcag
2041 tatcagcagt tcctttatta gattttttga gtgtgccttt aatctcaccc gatattttga
2101 tttcattctt caccttaact tctgaatcag ttttaggatc ctttgtattt ctcccttgat
2161 ccaattcctt ctcaccagat ttcttatcct tgagtgcttt ctggtgttct ctttcgacta
2221 tttttttcct gtgttcaagc cactgagtcc tccatgtatc aagtgaagga agggattcgg
2281 acaagtcagg aacatataaa acagtaactt ctttatgact aaatagacca tcttccccga
2341 ttctatcata gtgtatctca aggaaacggt tccaatgctg gcaaaattgg agatcaagtg
2401 ctgtagtgtc tttaagatac ctttgtgctg ttttaatcag agaagcatct tcaactgatg
2461 ggtccccacc atctatttca gcatcccatg gccccccaat tgccaataaa gaactatctt
2521 tcttaagcat tgcaaatcgc ataacattat agaagtgaac tatcttatct tcagggcttt
2581 tataagaacg catattattt aaagcagcag agtccatccc actcatcaaa agcacctttg
2641 cattccaaac agtattttga tgcttcgatt ctgaaatctt gtccgatgga accaaggcct
2701 tcttcccgcc atgtccatca agttccacat actcatgttc aaagctcact ggagtgtgaa
2761 gtgacatatg taagctttgt ttaggccaat gcaaaacaac cttcgagcat tcaggggata
2821 catatagtct cggatatcgc ttactcaaag acaaataatc cctctcagct tctaccagac
2881 agaatgggaa taccttgcat gtatattctc tctctctttc tctaaaagag gaccgatgcc
2941 tatgcacagc ctcgtgtcgt ggcggtgaag aagctctact aagtgaggga cgacgtggcg
3001 taagccttcg agcaggaaga tcttttgtca atctttgtag actccgctcc ctttctctat
3061 ctctccgatc caaagagcgt cttctatggc gctccctttc tctttctcgt tccctctctc
3121 tttctttttc tcgttctctc tctctttctt tttctcgttc tcgttctcgt tctctatctc
3181 tttctcgcct ctccctttct cttttaaggt cacgttcttc tctctctctc tcctcccttt
3241 ctctgtcttt tccttcgcac gtaaaagctc ccttcggtgc tcttcatccc tttcaagttc
3301 gcgacggtaa acagctctat catccttcct atcatgaaga agcgacatcg gatgtgcaag
3361 ataatcggag tcagttagaa ggccttttcc acttatgtag tcacggccgg ggggtaggct
3421 gacgccatat ggagcagtaa ctccagctgt tccatgagta gcgtagagat catcaatact
3481 tcttcgtaaa gcgcctccta aatgtgaagc ggatggcgca tgttgaatat tataaggagt
3541 gctcccaaga ataggtaaac tgcggggatc tacagtttct aatcttcctc catacgaact
3601 aacaggagca gctcttgctg caaggtattc ggattgtctc acgtcggaac cagaatgcag
3661 tggctgagct gccctaagca tttgctgctc tcgaagcaat gtagccgggt ccatccgatc
3721 atgtgtgtca acttggcgtt ggcgaataga tataggatca acatatcgtc ggcctgcatc
3781 attctgcaat tcaataccaa ggtaagatga ctgatctgca taatgcctcc tatcaactga
3841 atcataatca gaacccttcg ctaaagaata tggatctgat ttctgcgaat atgtatccgt
3901 tttctgggaa tacagatctg gtttctgcga atacggatct ggtttctggg aatacggatc
3961 tggtttctgg gaatacggat cggctttctg ggagtatgca tgactagatg caggcacata
4021 ctcatcatta tgtatacctg atgaagtagt tcctttgcca cctacctgat gagcgccgct
4081 taacgttgtt gaaccataaa cagaagcata gggtccactg tattgagtcc cttgttcata
4141 gtgagcgcta tatccactaa gatcggtatc ttgagaggaa ggtaccaatg gctgccgtga
4201 tgccatagca cgttgagcac ccacatcacc agctccatga gtttgaacat gtgtttgttg
4261 tccagaatat gacttctgag catatgcacc acttcccttt gaagggtaca tttctatttt
4321 gctttacgat acttggaatt ctccttgctg tgatttcaca attgctgatt tgggtggaat
4381 ccccggccgt aatggccact ctgcgttgat accactgctt
//
LOCUS FX553730 4221 bp mRNA linear TSA 01-AUG-2015
DEFINITION TSA: Allium fistulosum mRNA, contig: AFU_00005.
ACCESSION FX553730
VERSION FX553730.1
DBLINK BioProject:PRJDB863
Sequence Read Archive:DRR006298, DRR006299, DRR006300, DRR006301,
DRR006302, DRR006303, DRR006304, DRR006305, DRR006306
BioSample:SAMD00008822, SAMD00008823, SAMD00008824, SAMD00008825,
SAMD00008826, SAMD00008827, SAMD00008828, SAMD00008829,
SAMD00008830
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Allium fistulosum (Welsh onion)
ORGANISM Allium fistulosum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Amaryllidaceae; Allioideae; Allieae; Allium.
REFERENCE 1 (bases 1 to 4221)
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J., Shigyo,M. and Wako,T.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hikaru Tsukazaki
Institute of Vegetables and Tea Science, NARO, Vegetable Breeding
and Genome Division; Ano-Kusawa 360, Tsu, Mie 514-2392, Japan
REFERENCE 2
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J.A., Shigyo,M. and Wako,T.
TITLE Development of transcriptome shotgun assembly-derived markers in
bunching onion (Allium fistulosum )
JOURNAL Mol. Breed. 35, 55 (2015)
REMARK DOI:10.1007/s11032-015-0265-x
COMMENT URL:http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/index.jsp
##Assembly-Data-START##
Assembly Method :: Velevt v. 2.0
Sequencing Technology :: 454 GS FLX; HiSeq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4221
/cultivar="Ki"
/db_xref="taxon:35875"
/mol_type="mRNA"
/note="contig: AFU_00005"
/organism="Allium fistulosum"
/tissue_type="mixuture of 2-weeks seedlings, leaf, roots,
basal meristem, immature flower bract, mature bract
(about 1 week before anthesis), opened flowers, immature
fruits and sliced pseudostem"
BASE COUNT 1279 a 716 c 965 g 1261 t
ORIGIN
1 atcatccctc catggagttt gaaaaatcaa tcggattcgt gaatctcgat agtcggagtt
61 taaagctcgc ttctgctttg accaaatctg ggtacttcgt taaagcgtat cagggtaacg
121 agtcatgggt gatgcagcga ttcttagagt tgggcgggtc taaatgtaat tctcctatgg
181 aggcagttaa agattcttca gccataattt tgttggattc tgaagatgat ctaacagatg
241 tgttatttga gtctagtgga tttgttacag ggttacataa ggatgcgatt gttatactaa
301 attcagcatc gtcaaccagt cacattagca gtttagagaa atgtttatca gaaaacatca
361 atatcccttt tgttgatatg cgtgtatttg agggattttc tgaggattca aatgtaacag
421 acattgctgt ggtgtctgga aagcatgatg cagtacaaaa agctcaacct gttttctctg
481 cattatgtgc gaaggtatac atttttgaag ggaagttgat gtaggaagca aaattaaaat
541 ggtcaatgat cttctggagg gcattcattt tgttgcttcc gtcgaagcaa tttttttggg
601 tgttcgtttc ggtattcacc cagccattct atttgacata atatctaatg ctgctggaag
661 ttcaagggtc tttgtggata tcactcccaa aattttagta ggagatcaga agttaacatc
721 aattgtagac actatggcaa agaacgtggc ttctgttttg ggattggcca agtctctgcc
781 atttcctctt ccacttctag ccatgggata tcaacaactt atatacagtt cttcatgtaa
841 acatggagat gatatgcctg catccccatt gaaggtttgg gaacaaacgt ttaatatcaa
901 tattagagaa gcagctaaaa tggaagctta cgatccagaa aaccttgcac gtcaactttc
961 cctttcttca agcgttgtaa agcggattgg atttattggt cttggagcta tgggctttgg
1021 tatggcatct catttactga aatcagggtt tgaagttgtg gcatatgatg tatataagcc
1081 aacactatca aggttcatag atttaggtgg ccgagtaggg aattctcctg gagaagtatc
1141 gaaagatgca gaagtgctca ttataatggt tgcaagtgaa cttcaagctg aaagtgttct
1201 gtatggagat tctggctcgg tatcaaacct tccagctgga tcaactataa ttctttcttc
1261 aacagtgtcc cctgggttta ttattcgtct taaccaacga ttactaggtg aacagaaggg
1321 ttttaaatta gtggatgcac ctgtatctgg cggtgtaata agggcagccg atggaacact
1381 tactataatg acatcaggca ccgatgaagc tcttcggcat gctggttctg ttctcacatc
1441 attgagtgag aagctctata taatcaaagg aggatgtggt gctgctagtt ctgttaagac
1501 tgttaaccaa ttgcttgctg gagttcacat agcagcagca gctgaggcaa tggcattagg
1561 cgctcgatta ggcataaata caaaaaagct ttttgacatt attagccaaa tgaggggtta
1621 ttcttggatg tttggaaatc gtgtaccaca catgataaac aatgattaca ctccttattc
1681 tgcaatagat atatttgtga aagatttggg aattgtgtgt actgaaggat cccaccttga
1741 tataccactg catatttcga gtgcagcaca ccaattattt atatcaggtt ctgcttctgg
1801 ttggggtaga tacgatgatg cagctattgt gaaggtctat gagaaacaag ctggtgttaa
1861 tgttgaagca aaatctagta tagtaaaaga agatgtatta aaatcacttc ctcctgaatg
1921 gccggaggac ccaattgaaa caattcgttc tttaacgagt cagagctcaa aaacattagt
1981 ggttttggat gatgatccca ctggaactca aactgtacat gacatagaag ttttaactga
2041 atgggacgtt gaaacattag aggagcagtt caggaaaaag caatcttgct tttttatatt
2101 gactaattca agatcattga gtactgagaa ggcagtattg ctgacaaaag aaatctgtac
2161 aaatcttgat actgcagcga aagcaatcaa tggaactgat tttacagtag ttttaagagg
2221 cgattctacc ctacgtggtc actttccaga ggaagcagat gcaactgttt ccatactagg
2281 ggaaatggat gcatgggtca tctgtccttt ctttcttcaa ggagggcgtt acaccattaa
2341 tgatgtgcac tatgttgcgg attctgatcg gcttgttcct gctggagaga ccgagttctc
2401 aaaagatgct gcattcggtt acacatcatc aaatctcaaa gagtggatcg aagaaaaaac
2461 aaaagggaag gttcaagcta gaaacattgc atcagtttcc attcagcttt tgcgttcagg
2521 tggaccagca gcagtatgtg attatctttg cagtctaaga aagggttcca tatgcattgt
2581 caatgctgca agtgagagag atatggctgt atttgcagca ggaatgatca aagcagaaat
2641 gatggggaag aaatatctat gtagaactgc agcaagtttt gtatctactc gtattggaat
2701 aataccaaag cctcctatgt ttccaaaaga cataggaata ggtaagcata caaatggcgg
2761 tctcataatt gtaggttcat atgtccccaa aacaacaaag caagttgaag aactgaaatc
2821 taagttgggc gatgtcctga attgggtaga ggtgtcggtg gataaacttt cgatgaagtc
2881 acttgaggag agaaatgaag aaataaataa tgctgcagaa attgcaaatg cttcaataaa
2941 agcaaacaag gatacagtct taattactag tcgacaactt atcactggaa aatctccttc
3001 agaaagttta gaaattaatt tcaaagttag ctctgcattg gtggaaattg ttagaaaaat
3061 aagtgctcga ccgaggtata tcctcgctaa gggtggcatc acatcatcag atattgctac
3121 aaaagcatta gaagctaggc gtgctatggt cattggacaa gcacttgctg gagttccttt
3181 atggcggctt ggtccagaaa gtagactccc ttctgttcct tacattgttt ttccaggtaa
3241 tgttggtaat aatgatgctg tagcagatgt tgtaaagaat tgggcttgtc cgcttagaac
3301 ttctacaaaa gatatgcttc ttactgcgga gaaaagggga tatgctattg gtgcattcaa
3361 tgtatataat cttgaaggag tggaagcggt tgttgcagcg gcagaagaag aaaatagtcc
3421 agctattttg cagattcatc caggtgctat gaagaaaggt ggggtcacat tggttgcatg
3481 ttgcatttct gctgctcagc acgctaaagt accaattgca gtacattttg atcatggaaa
3541 ttccaaatct gagcttgtag aggcccttga gttgggattt gattcagtta tggttgatgg
3601 ttcacatttg tctttcaagg aaaacattac atacacaaaa cacatatcta ctcttgcgca
3661 caaaaagggc atgctcgttg aggctgagct ggggagacta tcaggtacag aagatgactt
3721 gactgttgaa gaatatgaag ccaaactaac tgatgtttct caggccaaaa tattcatgga
3781 gcaaacaagc attgatgcgt tagcagtttg tatcggtaat gtacacggga aatacccagc
3841 cagtggccct aatctcaaac ttgacttatt gaaggaactt gatgtattga ctcgaaatta
3901 cggagtaagt ttagttcttc atggagcttc tggtctatct agtgatctaa ttaaggaatg
3961 catcaagcta ggagtaagaa aattcaatgt gaacacagaa gttcgtaatg cttacttgga
4021 atccctgcgt acacctaaaa aagatctggt tcaagtgatg gaagcagcta aacaggctat
4081 gaaggcggtg gttgctgaaa aaatgaacct ctttggatct gcaggaaaag cttaaaaagg
4141 aaaatttcat atgaaatgtg aattgtaaac caaatgttta tttatttgta tatttgaatt
4201 ctgctcttgt ttcacaatac t
//
LOCUS FX553731 4168 bp mRNA linear TSA 01-AUG-2015
DEFINITION TSA: Allium fistulosum mRNA, contig: AFU_00006.
ACCESSION FX553731
VERSION FX553731.1
DBLINK BioProject:PRJDB863
Sequence Read Archive:DRR006298, DRR006299, DRR006300, DRR006301,
DRR006302, DRR006303, DRR006304, DRR006305, DRR006306
BioSample:SAMD00008822, SAMD00008823, SAMD00008824, SAMD00008825,
SAMD00008826, SAMD00008827, SAMD00008828, SAMD00008829,
SAMD00008830
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Allium fistulosum (Welsh onion)
ORGANISM Allium fistulosum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Amaryllidaceae; Allioideae; Allieae; Allium.
REFERENCE 1 (bases 1 to 4168)
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J., Shigyo,M. and Wako,T.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hikaru Tsukazaki
Institute of Vegetables and Tea Science, NARO, Vegetable Breeding
and Genome Division; Ano-Kusawa 360, Tsu, Mie 514-2392, Japan
REFERENCE 2
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J.A., Shigyo,M. and Wako,T.
TITLE Development of transcriptome shotgun assembly-derived markers in
bunching onion (Allium fistulosum )
JOURNAL Mol. Breed. 35, 55 (2015)
REMARK DOI:10.1007/s11032-015-0265-x
COMMENT URL:http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/index.jsp
##Assembly-Data-START##
Assembly Method :: Velevt v. 2.0
Sequencing Technology :: 454 GS FLX; HiSeq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4168
/cultivar="Ki"
/db_xref="taxon:35875"
/mol_type="mRNA"
/note="contig: AFU_00006"
/organism="Allium fistulosum"
/tissue_type="mixuture of 2-weeks seedlings, leaf, roots,
basal meristem, immature flower bract, mature bract
(about 1 week before anthesis), opened flowers, immature
fruits and sliced pseudostem"
BASE COUNT 1505 a 683 c 1008 g 972 t
ORIGIN
1 aagcagtggt atcaacgcag agtggccatt acggccgggg aaatcgaaaa aaaattgaaa
61 cattttcatt ctgttcctta ctttctctct ctagggtttc ataattcgca aaaaaaattc
121 ataaatcttc ggtttcaaat ccctaattgc cttgccgttc atatgtttac tcctcaaaga
181 agcgcctggt ctctaaaatc taaggtttca agcgaaaaac ctagatccaa aggcaaagga
241 attagaaacg ttgattctgc cgctactcct ttgccgccgc tcgggttgtt gaatgggggc
301 gatttagacc gaggtggtga agatatggag gcgtggaagc ggttcaaaga tgaagggtta
361 ttagacgagt cgatttgcta caagaaagat cgtgagtctc ttgcttcgag aatcattgag
421 ctcgaaaagg atcttcacga gtaccagtat aacatggggc tcctcttgat cgagaaaaaa
481 gaatggtctt caacttttga agaaatgaag atgcgtcttg cagaagctga agagattttg
541 aaacgggagc aagctgccca tattattgca ttaactgaat ccgagaagcg agaagataat
601 ttacgcaagg ctctgggagt tgaaaagcaa tgtgtcactg atcttgaaaa agcattacgg
661 gagatgcggt ctgaaattgc cgaggttaag tataccgctg agaagaagat gacagaagct
721 tttgcattgg aagcaagtat tgaggagaaa aggctggata ctgaaagaaa attgcattcc
781 gcagatgcaa agctcgctga agctagtagg aagagttctg aaataaatag gaaattagaa
841 gacgtggaag atcgcgaacg caaagttcag agagaattaa actctatcaa ttctgagcga
901 aaagctctcg aaaaagatat ttctgaacaa aaagagcatt tgcgggagtg ggaaaaaaag
961 ttacaagatg gtcaaaacag actgcttgat gggcagaggc atattaatga gagggaggaa
1021 agaataaatg aggctgaagg aggtcttaag aagaaagaag aagagcttga agaagcaaaa
1081 agatcaattg agggtacaag aaatactctg aaacgcaagg aagaggatct tgatgtcagg
1141 ctaagatcat tggtttcaaa agagaaggag attgaactga aaatgaagaa cttacagaag
1201 aaggagaaag atttacatga aatagaggaa aaactcgatc accgtgaaag agaggagatt
1261 caaaagctac tcgatgaaca tagggctacc ctagatacca agaagagaga gtttgaatta
1321 gagttagaaa gtaagcgaaa gtccgttgat gaagaaatga aaagtaaatt tgctgcagtg
1381 aataaagcgg aaaaggaagt taaccgcaaa caagaactga ttagtaagag agaaaaggaa
1441 ctagagagta aaatggacaa aattaaaatt aaagagaagg atcttgagac taaatccaaa
1501 gctttgaaga agtgggagga atcattaaag tcggatgaaa agaagttggt agtagaaaag
1561 gatcagataa tgaaagatac acatgagctt aaggtatcaa taaatgaact tgaatcttta
1621 agagatgcgt taaatgctga acaacatcaa attgctgagg agagagaaaa gcttgaaata
1681 agcaaagaag agagagacca atatatccaa aagcaatccg agttgaagca agaaattgaa
1741 aagtatagga atatgcaaga ggaactttct aaaggaattg aatcgctaag agaggaaagg
1801 gagaagtttg agaaagaatg ggaatcactc gacgagaaaa aaataacgtt acagagagaa
1861 acaaaaaaaa tacatgagga gaaagagaag ctcgaaaagt ggcaccataa agagcaagaa
1921 aggttgagaa atgaagaggc taatgcaaaa gcagacattg aaaggcagct tgaagacatt
1981 aagctgcaga aagaagcatt tgagaatact atgaagcatg aaagattgat ggctcaagag
2041 gaagttgcta gacaattggc tgatgtcacg cgagagcttg aactccgaaa acatgatctc
2101 gagatgaaca tgcagaaaaa gcaagaagaa atggagagaa agctacagga gaaagagaga
2161 gaatttgaaa ctcgaaagga agccgaactt tgtcgcatca cctcactaat taatctaaat
2221 gattctaaac tccagaaact gagaattgaa caggaccgat tagatagaga gaaagaagaa
2281 gtcgaacttc agaaaaagaa actccagaat gaccaatctg agattcaaag agacattgac
2341 acactccgtc agcttagcaa aaacttaaaa aatcaacgtg cagaatttat caaggagaag
2401 gaacgctttc ttgcagcagc agagcgatgc aaaacttgtc aaaattgtgg ggtttcaatc
2461 agtgagctag aaatggtggg tatcattcag tcatcagcag aaattgagaa tgcagatatt
2521 gttttgccaa gccttcccga tgatcacatc gagcaacata tgaaaaacaa aggatcacat
2581 gttacatctc ctcaaactgg ttcccgggtt tttggttcag gatttcttca aaaatgcaca
2641 aaaatcttca agttttctcc tggaaaaaat gctgaaacta gcgctactac aacgcctttg
2701 gtgtttggcg agcaacttga tatcgttgca ccagaggatg cagcagctaa tgataacaat
2761 cctgctgccg atgttgagag tgttacagtg aatccgcctt tagtgtttgg cgagcaactt
2821 gatatcgctg catcggagga tgcagcagct aatgataaca atcctgctgc cgatgttgag
2881 agagttacag tgaatcctcc tacacttgca ccagtggcta ctgaacaaac tgaaaccgag
2941 gaatcttccc tacctaccga aaatgattcc ccaccaaagc agaggggagg aaggcagtct
3001 accagaagag ggagaggggc aaaaacagta agaagaacca gaaccatgga agctgttgtt
3061 gatgacgcta aagcaatact tggagacact ttgattgttg aagaggcgaa agaatcttct
3121 cagcagaacg atgaacagag tcaaggggct tctgtacaca cggttggcac cagtaatacg
3181 aggcagaaaa gacgtcgtgc gcctgcatct gaaatgacaa acagtgaact tgatgcagag
3241 gaaagcgaaa gtcagtctca gagcatatcc gttggaggag ggcgacgcaa gaagcgtcag
3301 acctcagcag cttcagaggt gcaagctcct gttgtggaga ggagatacaa cctcagacac
3361 tctacagttg cgaagaactc agcagcagca accccggcag gttcggatca ggcagaagtg
3421 caaactaagg caagtcatca agcttcacat gataataatc agatttcaat gggtgatgaa
3481 cctgctttag aaggtaacca caaagtgacc catacagtac agaaaactac taccacaagt
3541 gttatggaag tatcatcgaa gcatgtaatg gaagaaactc atgaagagaa caatgtggta
3601 caatctgtag aaatcagtga aatgtctgct agtgaagaag cagaaggtga agtacaaggt
3661 gttcctacca tagctgaaga accagcaacc ccttcaagtg gaagttcaac ttccggcgat
3721 attggaaatg atgatgacat ggatgatgat gaagaagaag aagagagaca caatgcttca
3781 atcggaaaaa agctgtggaa cttcttcacg acttgataaa atttgcgcat gcagtctagg
3841 ctctttattc tagctcttca gatttattat tcactttcaa ctcctttgag tttataattt
3901 caaggtggga tggagttagt tctttgtttg tattatttat tgcaaatact tgctacctgt
3961 gatttcttct tcttcttctt tcgatgatgg attgattaga tgatgactta tttgtattaa
4021 tactagttag accttgttag tctaggagat tggttgtgta atagtttcat ttgtggtttt
4081 cttcttatca aaattgtaag tttcgtgtct gcgcattttt atcataattg taatgtatca
4141 gaagatgatg atcaacggtt cttctatc
//
LOCUS FX553732 4047 bp mRNA linear TSA 01-AUG-2015
DEFINITION TSA: Allium fistulosum mRNA, contig: AFU_00007.
ACCESSION FX553732
VERSION FX553732.1
DBLINK BioProject:PRJDB863
Sequence Read Archive:DRR006298, DRR006299, DRR006300, DRR006301,
DRR006302, DRR006303, DRR006304, DRR006305, DRR006306
BioSample:SAMD00008822, SAMD00008823, SAMD00008824, SAMD00008825,
SAMD00008826, SAMD00008827, SAMD00008828, SAMD00008829,
SAMD00008830
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Allium fistulosum (Welsh onion)
ORGANISM Allium fistulosum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Amaryllidaceae; Allioideae; Allieae; Allium.
REFERENCE 1 (bases 1 to 4047)
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J., Shigyo,M. and Wako,T.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hikaru Tsukazaki
Institute of Vegetables and Tea Science, NARO, Vegetable Breeding
and Genome Division; Ano-Kusawa 360, Tsu, Mie 514-2392, Japan
REFERENCE 2
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J.A., Shigyo,M. and Wako,T.
TITLE Development of transcriptome shotgun assembly-derived markers in
bunching onion (Allium fistulosum )
JOURNAL Mol. Breed. 35, 55 (2015)
REMARK DOI:10.1007/s11032-015-0265-x
COMMENT URL:http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/index.jsp
##Assembly-Data-START##
Assembly Method :: Velevt v. 2.0
Sequencing Technology :: 454 GS FLX; HiSeq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..4047
/cultivar="Ki"
/db_xref="taxon:35875"
/mol_type="mRNA"
/note="contig: AFU_00007"
/organism="Allium fistulosum"
/tissue_type="mixuture of 2-weeks seedlings, leaf, roots,
basal meristem, immature flower bract, mature bract
(about 1 week before anthesis), opened flowers, immature
fruits and sliced pseudostem"
BASE COUNT 1446 a 750 c 899 g 952 t
ORIGIN
1 atgatttgga gaagttgaaa gaggaagcaa aggcaaataa ggagcatatg ttacagtaca
61 aggatatagc gcgggtaaat gaaattgcac tgaagcaaat ggaatctgcc catgaagagt
121 acacccaaga ggctgaaaag gtgaagaaaa ttctagaaga tgaagttcag tctcttcaga
181 acaaaattca tgaattggaa gacaacttta agttgaagtc cgaggatttt gcatcacttg
241 ttgaatctaa agagcacgcg ctttctttag caatgtcgca gacttcaagt ttgagagaag
301 aacttgcaga aaaattatca cagattgagt tactggaagt tcaagtgtct tctttgaggg
361 atgatgtgga taaagagcac aaacgttggc aaacagccca agtcaactac gagagacaga
421 ttattcttca atcagagaca attcaagagc tgacaaatac atctaaagag ttgtctgcat
481 tacagtctga aatcgcaaag ctgaaagaac tctcagaagg gctaaaaaac tgaaaatgac
541 cttttgaaga aaacatggga aaaagaaaag gcagaacttg aactactgaa atcagaagct
601 gagaggaagt ataatgaaat taatgatcag aacaaactac tgcataaccg cttggaaact
661 ctgcacatca gattggctga gaaagaacat aattctactc cttcacatag tgaagatttt
721 catgcagaca gcgacttaca aagcgtcatt ggttatcttc gtcgctcaaa agaaatagca
781 gaaactgaaa tttcattgct gaaacaagaa aagtcacgat tacaatcaca acttgagagt
841 gctttaaaag catcagaaag tgctcaggca tctcttcgat cacaatatga aaactctcga
901 tctctgctct ttaaagatga agaatttaaa tctcttcagc ttcaggtaaa ggaaatcaat
961 ttgctgcgtg agagtaatat gcaacttcga gctgagaaca aacataattt tgaagaatgc
1021 cagaaattcc gggaagaagc tcaaaaggcc aaaatggaag ctgaaaaact cgagcatctg
1081 ctgcgagaaa aagaaaagga attggatgct tataagaagg aggttgagat gcttaatgta
1141 gagatagggt ctcttaacag taaactggca gagttgcgtg aaactacgaa aaatttggat
1201 gttgaggaat acgagaggat gaaggatgag ctcaaacatg taaagaatct tcttagtgaa
1261 agtgaatcag aagtcgagat gtcaaagagg ctcatttctg agaaacaaga atctataacg
1321 agcttggagc aaactcttgc caaatatcag tccgatttga ctgtactaga gaaaaggcta
1381 aatgatgctc ttcaagctga agcaaatacg aaggtggaaa ttgagaagct taagaagttc
1441 ggctctacga tgaagaaaag aaatgaaagc acaagggata ctcttatgaa agagaaggag
1501 actctagcaa aagagaagga cactcttaaa aaggagaagg aaacactagc aagggagaaa
1561 gaagagcttc tacgtaaaaa ccaagctctt ctcaaacaaa tagaggattc taaactaagt
1621 aggagaaata ctggtgaaag ttcaaatgag caaaccaaaa aggatcaaga aaaggacact
1681 cgaattcaga tgttagaaaa aactctggac agacgcaacg aagaactgaa aaaagagagg
1741 gatgaaaaca agttgaaacg aaataagtct cagagcgttg tgatggacct tgttcagaaa
1801 gttaaagcgg aacaagtaaa ggttgaagag gaacttggaa agctcaatca tgcaattgcc
1861 ataatcttag agcgctccgg tcttactgcc caacttcctt ctacaagcaa cctggatgaa
1921 caagcacgtg cataccgcca ggcaatcaaa tatttcatag attttgtaga tagcacaaat
1981 gatcttaatg ctcttccgtc tacgactact gatccatcaa atgttgatgc ctcctctatc
2041 acctcccatt cagggcggga aattactagt caacaaccaa ttagaatgtc tgcgcctcga
2101 tcctctaaag gaaatgtagg cgaaattgag aaacggccat ctccttccaa acccgtagca
2161 agtggagttc gcagaccgaa acttgtgcgt ccacgtcttt ctgcagaatt taccaaggct
2221 tctgtaatgg agcagccatc cacaacttta gcggaaagga acaaacctaa tgataaccaa
2281 acggaaccat ccaccagtga gaaaacaaaa ccaaatgaag ctgaaaatgt tcttcctccc
2341 ggtgcctcat cttctgtatc atctgctaga aaaaggccgc cttttcttcc atttccgagc
2401 tcaacaaaga tgcttttgat tctctagacg gggcaaacga tgaatcagct ccttcaatta
2461 aaaaatccaa gaattcagaa acttctacag ttattgacag ctctactgat gtattaccat
2521 cagaccttcc atcttctgaa actcctgata ctgtacaact ggaggttcct tctgacattc
2581 ctgagcagcc agtgttgcct gctgaacata tagaacctgt tcaggattta gcagcctcaa
2641 caaatgatga aatcatagat gaagaaaaag ccgatgatga aatgatcacg aatgtgaaag
2701 aagaaacaga cgagcaactg aaagagtctt cacctctccc tgagccaaac gaagaggatg
2761 acgatcatca agatgaagaa ggtgacacag ttatgatgga agatgaactt ttatcagaag
2821 aaaaaataaa cgctgagatg gatgcagtta atgatgacga acctcttaag gaagatgcac
2881 ttgtagccga ggaggctgaa aatgaggaag atgaagacag agaggaagga gaaatggtcc
2941 ctgatgataa taacgatata gaacaacaag atcaagaccg agaagaagaa aacgctgcta
3001 tttcaggaga cgaggaaggt gaaattggcg atgaaagcga aaaggaagat gtcactccag
3061 ctgatgataa acttgaggat gttgatgcta cgaatgtaga agatgtggct gtgcctgaag
3121 gcactgaaca agtagatgag ggtaacaatg aagacgatgg tcctactgat cctgcacaaa
3181 gtcctattag gtccaccagt catgacagtg gcaataatca ggccacaaat acttctttgg
3241 aacacagtcc tcagaaatct gctaccactc gagaggtctc acctgctcct tctcaacctc
3301 aatcttccat tagagagcga cagagaagcc ccagtcctaa cccaaacacc acttcttcag
3361 cagctgttga gacggatgaa tctacaacac aaactcgtgc atctggaaga acaataagca
3421 tatctgatag agcaagagag aatgccaggt tgcgacaagc tagaatgaca gcttccactc
3481 caaaccctac acctcctcca cctagaggaa ggggtcgagg caccagggga ggtcgtggaa
3541 caagagggag aggagtatga ggttgataga gtaatggtgc caggtgccaa catgcgactg
3601 ctaccatact tagtctggcg ctttgtaggc aatgatatta tggatataca taggttcgta
3661 aaatgatgcc cgtgtaacaa ttgattcggg tgcaagtgat gtaagagtaa ttgcagtaca
3721 cattcctaaa ttttggctgg ttaaatggta ttttgtgata agtcttaaaa aggacgcgca
3781 agtgatgtaa cacttggtgg caggatcaag attctgtgca atggttggtt atgaatcaaa
3841 cagagtagtg taagtccgtt attaaccgtt cagtggattg caagatatat tcagtgcaat
3901 caagttttaa attatgtttc cttcgtttta aaaaaaggaa gttaaaatct taccttaaat
3961 tgtaaaacgg ctcacttatg tataaagtca ttccttgtat tgccttttat tttcaaaaca
4021 gtttcttgta atgcgttttt acagtag
//
LOCUS FX553733 3920 bp mRNA linear TSA 01-AUG-2015
DEFINITION TSA: Allium fistulosum mRNA, contig: AFU_00008.
ACCESSION FX553733
VERSION FX553733.1
DBLINK BioProject:PRJDB863
Sequence Read Archive:DRR006298, DRR006299, DRR006300, DRR006301,
DRR006302, DRR006303, DRR006304, DRR006305, DRR006306
BioSample:SAMD00008822, SAMD00008823, SAMD00008824, SAMD00008825,
SAMD00008826, SAMD00008827, SAMD00008828, SAMD00008829,
SAMD00008830
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Allium fistulosum (Welsh onion)
ORGANISM Allium fistulosum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Amaryllidaceae; Allioideae; Allieae; Allium.
REFERENCE 1 (bases 1 to 3920)
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J., Shigyo,M. and Wako,T.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hikaru Tsukazaki
Institute of Vegetables and Tea Science, NARO, Vegetable Breeding
and Genome Division; Ano-Kusawa 360, Tsu, Mie 514-2392, Japan
REFERENCE 2
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J.A., Shigyo,M. and Wako,T.
TITLE Development of transcriptome shotgun assembly-derived markers in
bunching onion (Allium fistulosum )
JOURNAL Mol. Breed. 35, 55 (2015)
REMARK DOI:10.1007/s11032-015-0265-x
COMMENT URL:http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/index.jsp
##Assembly-Data-START##
Assembly Method :: Velevt v. 2.0
Sequencing Technology :: 454 GS FLX; HiSeq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3920
/cultivar="Ki"
/db_xref="taxon:35875"
/mol_type="mRNA"
/note="contig: AFU_00008"
/organism="Allium fistulosum"
/tissue_type="mixuture of 2-weeks seedlings, leaf, roots,
basal meristem, immature flower bract, mature bract
(about 1 week before anthesis), opened flowers, immature
fruits and sliced pseudostem"
BASE COUNT 1410 a 651 c 844 g 1015 t
ORIGIN
1 gcagtggtat caacgcagag tggccattac ggccggggac ttatgtatca cataaaaatt
61 aatttcagta tccttttttc cttttttctg tttataacca ttttagtttt atttaatttt
121 ttcagttaga caagcgcaca aaaaaaaaaa aagggcgaaa agttgatgat tgaaaatcaa
181 atcatataaa aaccctaatt tgaaagactg attaatggaa ggtggaccga agctggaggc
241 gaaattcctt aagcttggaa aggagctttc ttcttttcct cctgaaaatg atctttatgc
301 ccatcttgag gaaattgatg gtctcttgtc aaatgtggaa cagtcacctt ctcggacaat
361 gttaaatgct ctgcagccac taacaaaagc attggctgcc aaagaccttt tgcgtcattc
421 agatatggat gtaaaagttg ctgtggcctc ttgtattagt gaaattacaa gaataacagc
481 accagagaca ccatatgatg atgatgttat gaaggaaata tttcaattga tcgttggatc
541 atttgcaggg ctggataaca catccagtcg ttcatataaa aaaagaattt caatacttga
601 aactgttgcc aaggttcgct catgtgtcgt aatgcttgat cttgaatgtg atgatttgat
661 cctcgagatg tttcatcaat ttgtgaaaag aataagggat gaaaattctg aaagtgtctt
721 ctcgtgtatg gaaacgatta tgacacttgt aatagaagag agtgaagatg ttcccatcga
781 gcttctttct gttcttttat atactttaaa aaatgacatg gaagtcttgc ctattgcaca
841 gcatttagca gaacatgttc taaacaattg tgctagtagg ataagaccac acttggtgga
901 cttagtccga actataggtg ctcctttgaa tgaatatcac aaagtaattg catccatatg
961 ccaggagaac tccaatgtgc ttgataaaca agaagaaaca aacgatgaag tcaaggtttc
1021 cacagaagaa gatgctgggt tccctgaaaa tgatgcggtt catgcatcaa taagcaatgg
1081 ttctgttcag aatggaaatg ctgatactgt agagtgtccc ttctctccag tacattctct
1141 tggaaatgaa aagcctgaaa attttgtttc tgatgattca ggctgtgata atttggaatc
1201 aaatactaaa aattcagacg atactgggag atatgttcaa tcagtgacta acacagaaaa
1261 tagccctaaa gaaactggtt tcccaaaagt aaatgaaaac tctactacca taaatcaaca
1321 ttcagtctct attggatctg aaaagaaaaa tgaggccagt gtaagtgtac aggcgccaat
1381 tgcagaatta gagactccaa tttctttaga aactaaacag caaaatgtat ctaacataac
1441 cactgtccag aaagacccta aagtttctca gacaaatggt aataccgatg tagcagcaga
1501 tccaactact tctgcacatg tggaaaaaga atcatgtagt gatattcttc gtcgcgatga
1561 tgtgactaat tcaaaaaatg atgcatcaga atcttcaaaa ggtgacaatg tagaagcaac
1621 gactactgta aaaagtgatt atgcttcaaa accaaaccag agtatattta aaaggggtag
1681 aaaaggtaaa aaaggtagat ttttcaaagg aaagaagtca gtatctgcag aaaaagtatc
1741 tgtacagaaa gaaagaggta cgccagttaa gatatctccc tcaaatgata atgaatttga
1801 gaacaagttt ggaaaagctg atgacgtcga aacaccaaaa aatatagtgt ataaatcaga
1861 catagtatca aaaatcattg gtaaaagggg gcgacctagg aaggagcatg ctgtagagaa
1921 agtgaaagat cctgcagatc taattttaca ggagtctgta gagaaagaaa gagatacttc
1981 agttgtaata tctccttcaa aaggtgatta ttctgagaag aagcctgaag ttgccaatga
2041 tgttaaagca cagataggta aaagggggcg acctagaaag gagcatgctg tagaaaagga
2101 gaaaggtccc gcagatcaag ttttacagga gttcgtagag aaagaaagag atacttcagt
2161 tgtaatatct ccttcaaaag gtgattattc tgagaagaag cctgaaattg ctgatgatgt
2221 taaagcgcag attatatctg taaaagaatc agttatggtt tcaaaaagct ctggtaaaag
2281 aggacgacct agaaagaagc atgctacagg aaagggtaaa ggccccacca ataaagcttt
2341 acctataaac tgtgatgcta atgtgaagga gtcctcagct ttggataacg tcgaggctcc
2401 aaaaagctta aattatgaac gaagtaagct aaaatctaga agtaaaaggg gtcgacctaa
2461 aaagaaggat gctatagaaa tagagaatgt ccctttagat gaaatcttat tatccggaag
2521 taatacatct gagcacatgc atattattaa atgtaaagga agtcggacta aagtgaagga
2581 ttcagtcgct aaaaataatg aacctttaca tgaagatttt tctttgaaag gcgacaaaac
2641 tgggaaggct gaaagtattg atgacattga gtcaccaaat ggtttgacaa atgactcata
2701 cataacgcca aaaggaaaaa gtaaaaaagg acgaccaaaa aaggcaagtg ccctagaaaa
2761 agagagcgat cttcccgatg cagtgttgcc tttcaaaagt ggatttgcag aggaccctga
2821 aaattttgaa acaccaataa agtcaactga tctggacgtg atgtcaaaaa ctaaaggcaa
2881 aaggggccga cccaaaaagg agtttgttac acaagaatct cctgtgatca ataaacccag
2941 tgcaaagaaa caaaagggag acagaaatat cgttggaaaa gatgttgata ttgggtcgac
3001 tttacaggaa acagcttctt cacttaaatc tgctttgaag tcacaaagtg cagataaggc
3061 taaccttgat agttgctatg aacccaggtc aagaaggaag cgtgccacaa acacagatga
3121 tatatatgta aagaacctcg agcccaaaag gaagttggat gaacgccttg ttggctccaa
3181 aattaaagtt tggtggccag atgataagga gttttacgaa ggtgttgttg aatcctacga
3241 tcgtgataca aagcaacaca agattgccta tgccgatggt gatgtagaag tgctattcct
3301 aaaggatgag cggtgggaat acgttggtga taaagacatg tctcaaacca agaaggcaaa
3361 aacagattct gcatcaaaac aggcaaagtc agaggaacaa gctaagagca tggctgaacc
3421 tagcagcaaa gacactccaa gaccaagggg tagacctagg aaagaaactc acagccaaaa
3481 gcctgatgta ttacctgaca atattagccc tgaaagcatg aagcaaccaa gagagaaacc
3541 ttctagtgat gagaaaatca cagctatcaa aattctgtca aaattgaaag atgtggataa
3601 cagtccaagt tctagcggta ggtcaaaggc aaagaagaaa ggtactccag tttcaggtac
3661 aaagttgaag gttacgtttt ctaaaagcca gccaaagaat gaaacagaga gtacgcctct
3721 ttctaaggat ccgaagtgag gacatatttt accttctggt ttagggtata tatatgctgt
3781 ccatgttctg tcgtggatcc tttcagttta tattttgtaa cctatgtgat aatccagagc
3841 agtgttagct tgcattgaca agtttagaat tgagaaattg gttgtatatg ggattatgat
3901 attcacatgc ttttcaccct
//
LOCUS FX553734 3875 bp mRNA linear TSA 01-AUG-2015
DEFINITION TSA: Allium fistulosum mRNA, contig: AFU_00009.
ACCESSION FX553734
VERSION FX553734.1
DBLINK BioProject:PRJDB863
Sequence Read Archive:DRR006298, DRR006299, DRR006300, DRR006301,
DRR006302, DRR006303, DRR006304, DRR006305, DRR006306
BioSample:SAMD00008822, SAMD00008823, SAMD00008824, SAMD00008825,
SAMD00008826, SAMD00008827, SAMD00008828, SAMD00008829,
SAMD00008830
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Allium fistulosum (Welsh onion)
ORGANISM Allium fistulosum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Amaryllidaceae; Allioideae; Allieae; Allium.
REFERENCE 1 (bases 1 to 3875)
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J., Shigyo,M. and Wako,T.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hikaru Tsukazaki
Institute of Vegetables and Tea Science, NARO, Vegetable Breeding
and Genome Division; Ano-Kusawa 360, Tsu, Mie 514-2392, Japan
REFERENCE 2
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J.A., Shigyo,M. and Wako,T.
TITLE Development of transcriptome shotgun assembly-derived markers in
bunching onion (Allium fistulosum )
JOURNAL Mol. Breed. 35, 55 (2015)
REMARK DOI:10.1007/s11032-015-0265-x
COMMENT URL:http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/index.jsp
##Assembly-Data-START##
Assembly Method :: Velevt v. 2.0
Sequencing Technology :: 454 GS FLX; HiSeq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3875
/cultivar="Ki"
/db_xref="taxon:35875"
/mol_type="mRNA"
/note="contig: AFU_00009"
/organism="Allium fistulosum"
/tissue_type="mixuture of 2-weeks seedlings, leaf, roots,
basal meristem, immature flower bract, mature bract
(about 1 week before anthesis), opened flowers, immature
fruits and sliced pseudostem"
BASE COUNT 817 a 955 c 497 g 1606 t
ORIGIN
1 cagtgactat ggtcatatac aataacatag ctaccacaca ttagtctgta ccacaaacca
61 aaaacaagtc aaagcataca taaaccatat ttacatacac ctgaatcagt tttaacatcc
121 tataagccac aaaagttgta atatattttc accttgtgat tacctgctta catttgaaca
181 cacaataaac aaaagtacat actaggcagt acacctgaac catacagaaa gtggaattca
241 cattttatgt tgtaaataca catatataca tcccactgaa catagtcaag tctcagtgaa
301 gaaaggcact gatgtcgcaa atcaagcttt tgcttttctg gctctctttg ctctgggttt
361 gtgagtttct tcttgttcag atgatttttt gcctttgtta tcttcaagat catcagctaa
421 tttggttaat tcttcttgaa tcagcagttt tatggatgct ttccttgttg tcaaatctgt
481 tttgtagtga gtacttaggc ggttcagaat gtcagtgaag gtggccgtat taaaatcaac
541 tttcttcaga atatcacata tagtttctct cagttcctcc ttgcttggat ttgatctgct
601 agacttttct ggtttagtct tctctcctga actctttttt gtgctggttt tctctgttga
661 atctaacttt gagactgatt ttccttttga ttcggattgt cttgtcaatc tacctttgaa
721 gacggagact gatgtcaatt tttcttttgg ttctaaactt gacgatgctt tctcttttgg
781 ctctaatatt gggtctggtt tttcttttac ttctgacttt gaagtcgatt tctttctaag
841 tgcaccagaa tttttcttct ttctagcgaa caccttttca ccgctgtcat cattcttatc
901 agagtttgtt gcttttgtag gggttctaac tgatggagtt ttcttagagt tgctttttct
961 ctttgccttc cccttcaaaa cccccaaatt ttctggtaca gtttcaacag attttttgtt
1021 catctctgag tccgagtctt caaccccatc ttcatctttt tcctcttcct tttcagacct
1081 attttcctcc ttactttcag gctgtgcaag cttttcatca ccttcagaat catttccctc
1141 tttactatat tcttcttcat tgttgtcatc atcatattct tccttgcctt tgctcttctt
1201 catctcttta ctaactgatt ttacagttgc atcatctgtt ctttttgaag cactttcatt
1261 agatcctctt ctgcgtttgc gagattttgg ggtcacctga tcatcctcgg actgtaagct
1321 atcgcttgct ggatgaggag cagacaaaaa ctccagcagt ttggaaatga ggttctcctt
1381 tcgagcatta gtttttgaca caggtataca taatagatca caaaaactaa gtaagttctc
1441 tttcacgcat ttgtcaagtc gttcctttac tttagccctt tgtttctcat cactctcatg
1501 ccagacaaat ccagaaaact gaagaatgtg atttctgaag tctgctaact tccctttcct
1561 tccaaacaga atctggtgta acaacttaag atcacttggc ttcattcgtg ctagtctgta
1621 acccactttg ggtatatcct tcagcggggt accacatccc ttctcaacta caaaactcct
1681 ctctggctct ttttcaatga cttcaaccaa tctttccact gactttctct ctctaacagg
1741 acgttcaatt gaaggagtag gagagctcag tgtcaccacc tttggttttt tcatgctcgt
1801 tttcttctcc tcttcttctg gttccgcttt cttgtctctt gctccagttc tttgcgtaac
1861 ttttctcctg cttctagatc tctttttcgt ccttgatcct ccatttttat ccttctcctt
1921 ccttgtattt tggtcttctt tatcttctga attatcctct gcttgagcat cttcagcttt
1981 ggtcattctg acatcctcat tttcattttc acttctgtct tctctttcta catccttttt
2041 gacttcattt ttgttttctt ctatgtccat catctccaca tcatctgttt ctttcacttc
2101 cactttgctc tgttcaccta cctcattagc attgattgta acattctcat ccttcaagtc
2161 ctgtgcactg cggttctctt ccgctttgtt agcatctttt tcatcttcca aattattctt
2221 atcttctatt tctgttgcag gttcgtttgg cttgtccaat ttactagcat ccttcgtatc
2281 actcttattt tcctctataa tttctgccac ttctttagca ctttttccat catttatatc
2341 tttcaagcca ttcttctctt ccactttcat ttttctttca tccactttgc ttgcatcaac
2401 atcattttgc agttctttcc cgcttctttc ctcctctggc atgttagtat ttttcgcatc
2461 atcagtacca atgtcttctt caatatccgg tttttcttct tcaatatcat cagtaccaat
2521 gttgcagaca acatcctcgt atttcagatt gttttcatta cccttccttt ctgcttcttt
2581 gatttcttct tcaccaaccg tgcctttaga tatgcctttt tcttctgttc tcttcgtgtt
2641 ttcctcacca gatgctttat cgacatcatc cttgcatgat tcatttatgt cccacttcgc
2701 attcttagat gctccatgaa tttcttcctc aatgctattt ttcttatcac cctctttttt
2761 ctcaacctgg atgtttctgt caataacatt aacttcaata ttaacttgct ttagtttgtc
2821 gttcttttta ttttcagcat tagtatcttt gctaattcca atcttttctt ccttatcagc
2881 aatagccttg tctttcaact ttgtattgct gtcttcagca ttcatgcttt ttgcattatc
2941 ctttttgtca gttcctgtaa tattttccat gccaaatatt tcttgggcaa cacttttctt
3001 gccagcttca tctatatctc ccttgtaatt ctcagactcg ttgagggtct ctccaacaat
3061 attcttagac tcatcaaggg tctccccaac aatattttta gactcttcga gagtctcccc
3121 aacaatattt ttagactctt cgagagtctc cccaacaata ctattggact cttcaagagt
3181 ttctccaaca gtatccttca tattgtcatc ctttttattt tcatcactta ccctcgcttc
3241 ttcgttgact atattcactt cttcattctt actatcttca acactcttgt cctcttcaat
3301 agccgtaatt tcctctacag ctttattttc attaccatcc tttttctttt catcttcgct
3361 agtttcttca ctaacttttg cttcatctac aacgttgtcc ccttcaccat ccacttttcc
3421 ttcagctgta ttagtttctt gaaaaaattc tgctgcatct aatactttct tttcctcact
3481 agtattcact tcatcagtaa ctttcttcaa ttcttctttc ttactatctt cagcaccgct
3541 ttcttcatta gccttaattt cctctatcgc tttattttca tcaccgccct tttccttttc
3601 atcagtttct tcgctgattg ttgcttcaat tacagcttta ttcacttcca tgtccttttt
3661 ccccactgga gtactagttt cttgaaaaag ttttgtttca tctaatacct tcttttcgtc
3721 cacttgcttt tctctagcat tgttcttcgg tgtacttaat tcatcaacaa ctgtattcat
3781 ttcaacttga gttattgggt cgggttcttc cattactata taattcacac agtttgagaa
3841 gcttcaattt ttacgcaaag ttacttgtaa gagtg
//
LOCUS FX553735 3854 bp mRNA linear TSA 01-AUG-2015
DEFINITION TSA: Allium fistulosum mRNA, contig: AFU_00010.
ACCESSION FX553735
VERSION FX553735.1
DBLINK BioProject:PRJDB863
Sequence Read Archive:DRR006298, DRR006299, DRR006300, DRR006301,
DRR006302, DRR006303, DRR006304, DRR006305, DRR006306
BioSample:SAMD00008822, SAMD00008823, SAMD00008824, SAMD00008825,
SAMD00008826, SAMD00008827, SAMD00008828, SAMD00008829,
SAMD00008830
KEYWORDS TSA; Transcriptome Shotgun Assembly.
SOURCE Allium fistulosum (Welsh onion)
ORGANISM Allium fistulosum
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Asparagales;
Amaryllidaceae; Allioideae; Allieae; Allium.
REFERENCE 1 (bases 1 to 3854)
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J., Shigyo,M. and Wako,T.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2013) to the DDBJ/EMBL/GenBank databases.
Contact:Hikaru Tsukazaki
Institute of Vegetables and Tea Science, NARO, Vegetable Breeding
and Genome Division; Ano-Kusawa 360, Tsu, Mie 514-2392, Japan
REFERENCE 2
AUTHORS Tsukazaki,H., Yaguchi,S., Sato,S., Hirakawa,H., Katayose,Y.,
Kanamori,H., Kurita,K., Itoh,T., Kumagai,M., Mizuno,S., Hamada,M.,
Fukuoka,H., Yamashita,K., McCallum,J.A., Shigyo,M. and Wako,T.
TITLE Development of transcriptome shotgun assembly-derived markers in
bunching onion (Allium fistulosum )
JOURNAL Mol. Breed. 35, 55 (2015)
REMARK DOI:10.1007/s11032-015-0265-x
COMMENT URL:http://vegmarks.nivot.affrc.go.jp/VegMarks/jsp/index.jsp
##Assembly-Data-START##
Assembly Method :: Velevt v. 2.0
Sequencing Technology :: 454 GS FLX; HiSeq2000
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3854
/cultivar="Ki"
/db_xref="taxon:35875"
/mol_type="mRNA"
/note="contig: AFU_00010"
/organism="Allium fistulosum"
/tissue_type="mixuture of 2-weeks seedlings, leaf, roots,
basal meristem, immature flower bract, mature bract
(about 1 week before anthesis), opened flowers, immature
fruits and sliced pseudostem"
BASE COUNT 1155 a 744 c 806 g 1149 t
ORIGIN
1 aagcagtggt atcaacgcag agtggctatt acggccgggg agactaaacg cgtagaaaat
61 taggaaaaat aatctacgac ctgatctctc tcaatttcct ttctacaaga tcaggtatta
121 taagttgcgt attggatgga tgatggcagt atcaatggat aacacagtag ctccctcatc
181 tggggagttt gcagaacgtc tgtacaagaa gaatattgaa ttggagaaca atctacgtaa
241 atctgctaaa tcaagagttc cttctgatcc taatacatgg tttcaaattc gtgaaaatta
301 cgagtccatt atcctcaaag atcatgactt ctctgaaaag catgatatcg agttagctct
361 ttggcaattg cactacagga gaattgaaga gtttcgaaca ctgcttaatg ttgttaaatc
421 ttctggatca gtatccaccg aaggtggacg aactttgcca aagcctgagt cagtaaagaa
481 aatccgttct ggttttaaaa cattcctttc ggaatccact ggattttacc atgatttgat
541 actaaaaatt aagtcaagat ttggtttgcc acttggtatg ttttctgatg gtcctgaaag
601 ccaaactact gcgataaaag atgaaaagaa atcggctgat atgaaaaaag gattgatttc
661 ttgtcatcgt tctttgatat atctgggcga tcttgctcgc tataaaggat catatggaga
721 gggagattct atcggtcgtg agtttgctgc tgcttcaagt tattacactc aggcagcttc
781 actttaccct tcaagtggaa acccacatca tcagcttgcg atattggcat cctactctgg
841 cgatgaactt gtttcaacat accgttattt tcggagtttg gcaacagacg ttcctttttc
901 aacagcaaag gacaatttga taatcgcgtt tgaaaagaat cgtcaaaact tctctatgct
961 tcctagtaat cacagaggcc tgacggcaaa gccattaggg tcaagaaata acgggagagg
1021 taggggtaga gcagatgcta gacctccaat aaaagcttcc aagaaagagc ctacttctgt
1081 gaaggaagga gagctaagca actctgaatt attgaagtcc tttgttacgc ggtttgttcg
1141 agtcaatgga attcttttca cccggacaag cttggaagct tttggggaag tgttctcatc
1201 agccaaaagg gaccttctag accttctatc ttctgggtct gtagatgaat tcaaatttga
1261 tctaaacgct gatgaaattg gtctactcat tgtgagactt atagccattc taatatacac
1321 agtccataat gtgaacacgg aatcagacgg tcagtcgtat gcaaaaatcc tacagcgtac
1381 agtgctactt caaaatgctt atacagctgc tttcgaattt actgggcata ttatagaaag
1441 atgcaaacag tcgcaagatg tagcatcgag ctttctttta ccagctattt tagtcttcac
1501 tgaatggttg gcatgccatc aagatattgc aactggccct agctctgatg ctgaggacaa
1561 acaggctggt attaggttct tcttctggaa tcagcttgta tccttaatga ataaccttac
1621 atctagtggg cttgtcactg gaaacaaaga tgaggacgaa actttcttgt cggatgctag
1681 taggtataat gaagaagaaa ctggtaatag acttgctttg tgggaagatt ttgaactaag
1741 aggatttgtt cccttggtac cagcacactc aattttggat ttttcaagga agcatagtgt
1801 taagagcgag aaggataagc aagctcgtgt tcaaagacta tttgctgctg ggagatccct
1861 tatgactgtg gttcgtgttg atcagaaaac aatatatttt gaccaccgtc ttaagaaatt
1921 catgataggc gtagaaccag aatcgaatga ttatatgcct gctagcttgt cagaaacttc
1981 tgcattcaat ggaattgaga gcaggcccaa ttcagtgacc gtacaaccaa cgactcagat
2041 atatgatgat gcagacgatg acgaggaaga agaaattgtt tttaagcctg ctgttgctga
2101 gaagtatcct atcacaaatg aatccacttc catttcaact tctattcatc catcagatgt
2161 tactcagaaa acagttcagc ctattcaaat ttctactgtg gagccaattc agccgattca
2221 aatttctgct aaggagataa ttcagcctac tctgctttct gttcaggaga caattcaacc
2281 tcagcctatg caaatccctt acaaaggcat acagacaaac ttaaatgctc aattaccagc
2341 acaaggagcg cctcttagta attttcaact aggtattgct actgctagcc actcccaacc
2401 tttacaaagt gtgaatttaa acacttcaaa atggttaatg gagcaagcaa tattatctaa
2461 taccctaaag aaccaacaca acgggaatgg ggtcttacac aactatgagc agcagcaagg
2521 cttgcgttcc attcagcctg cagagtatac acctcaactt ggtaattttt ctcagcagca
2581 ggctttacgt aacatgaaca tgaacacctc taaatggtca atggaacaag caaccttatc
2641 taatggcctt acgaatctca acataaatgg aaatggattt ctagctagta atcatggtgt
2701 acaaggaggg ttgagttcta tgcctatgat ttctgcttcc tcagttcatc caatcagcag
2761 acctaatcat tcacacatga cttcaagaat gacttctagc agcatggcat tgccaaacgc
2821 acctttgaaa gtgcctacca gtaaacctac taggcatctc ggtcctcctc ctggatttac
2881 aaacatttct tccaagcagc ctgaagattc tacactagaa tctatgataa atggaaatgg
2941 taatggaaat ataactttaa tggatgacta taggtggcta gatgaatatc agccttcccc
3001 tgttacagct tctggggtgg ttagcaatgt ttctcttaac gatagtgccg ttaggtataa
3061 tggtgcaatg gatttcccat tccctgggaa gcaaattccc aatgttccag cccaagtggt
3121 cgatgatgag tggatggatt tcaagcgttt tgagcatgcc aggttgaatt cggagcaaaa
3181 aaagcctgcg atgattccag atcaatttca agcacaaaca ctgtggccac ctggttacca
3241 tgtgtgatac ttcattataa cctgttgaga gtaattttga agtgatcggt cagcaaattg
3301 gtgctgtcga ctttggcacc atcctttcag tcattaaatt tctgttggac gtggataata
3361 ttgggacatt gctggtgatt ggtcttgaaa ctaggtgtgg agaagtcata tggtgtggat
3421 tgtgggaacc tcaaagctat taacaaaaaa ctatttcttc tcggtttcta ggtatttgga
3481 gtttgtaatg aagttcatca gttgaggaag taattgctat cttgttccga ctcttgatgg
3541 aaactagggt aaaattatta cttcatcagc tgtactttgg tatatatttt cacaagcctg
3601 ctgcttgtgt taatatattt gataatgtct tataataatt gggtgaataa tctctttgtt
3661 gataagagac ttctttgtct gaatccattg tgtatggtat aaaattatga gtatgggatg
3721 tgaacctgtt accttttgca agtctttgag tctgggaggc agtgacttcc aaaataccag
3781 ttatattttt aagcattatg tgaactatga atattagtac taaaaaaaaa ggaaaccgct
3841 tcggccactc tgcg
//