LOCUS       FX128642                 593 bp    mRNA    linear   TSA 17-MAY-2014
DEFINITION  TSA: Calophyllum inophyllum mRNA, contig: Ci_c12546.
VERSION     FX128642.1
DBLINK      BioProject:PRJDA67327
            Sequence Read Archive:DRR001052
KEYWORDS    TSA; Transcriptome Shotgun Assembly.
SOURCE      Calophyllum inophyllum
  ORGANISM  Calophyllum inophyllum
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Malpighiales; Calophyllaceae;
            Calophylleae; Calophyllum.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Yoshimaru,H. and Suzuki,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAY-2011) to the DDBJ/EMBL/GenBank databases.
            Contact:Hiroshi Yoshimaru
            Forestry and Forest Products Research Institute, Department of
            Forest Genetics; 1 Matsunosato, Tsukuba, Ibaraki 305-8687, Japan
  AUTHORS   Setsuko,S., Uchiyama,K., Sugai,K., Hanaoka,S. and Yoshimaru,H.
  TITLE     Microsatellite markers derived from Calophyllum inophyllum
            (Clusiaceae) expressed sequence tags
  JOURNAL   Am. J. Bot. 99, e28-e32 (2012)
  REMARK    Publication Status: Online-Only
COMMENT     Several-year-old seedlings naturally grown in Bonin Island were
            used for RNA extraction. About 3 g of inner bark, current year
            twigs and terminal buds were cut and frozen in liquid nitrogen,
            ground using mortar and pestle. Total RNA was extracted by the
            CTAB method (Le Provost et al., 2007), and contaminated DNA was
            removed by SV total RNA isolation system (Promega, Madison, WI).
            The cDNA library construction and next generation sequencing by
            Roche 454 GS FLX sequencer with titanium chemistry were carried
            out by the Hokkaido System Science Co., Ltd. (Hokkaido, Japan). To
            remove polyA and adapter sequences from the cDNA sequences, the
            Program cross_match (
            phrap.html) and TIGR SeqClean sequence trimming pipeline
            ( was used prior to
            further analyses. We used a EST sequence assembler MIRA (Chevreux
            et al., 2004) to run de novo assemblies.
FEATURES             Location/Qualifiers
     source          1..593
                     /dev_stage="several year old seedlings"
                     /note="contig: Ci_c12546"
                     /organism="Calophyllum inophyllum"
                     /tissue_type="mixture of inner bark, current year twigs
                     and terminal buds"
BASE COUNT          157 a          133 c          111 g          192 t
        1 acccttgtca taaccatttg tgttaactgt ctaccataga aacatctgca acttctccat
       61 ctaaagaaga gctaaccctg tatggttcca tgtggacatt gtcatccatg acgtccatgt
      121 gaatccagga gcagggttta catattttct tctgcccatt ttcaccctgg tatgtatcaa
      181 tcaatttttg taagatcatc cagaatatag tcatgaactt tctgtatcag cacactgggg
      241 actggatctc cccagtttgt caagcgcctc acaagagtct tcttcttcct ggataaagct
      301 cttataaaca tttcccattc tgcaggaatg tctgttttgc taggaatatc cattgagcaa
      361 ccattagcaa taggatgttt catgttttgg tcaatgtctg agaaagttga gatattaaaa
      421 gatggaaagg gcaaaagatg aaggttgcgc agctgctccc ccaggaagga agctaagtgt
      481 agagcatctt cccatgatat tttatctctt atttgagcca atatctttcc tttgcatctc
      541 tttgttatta tatagggcca tatccctgcc cctcctggtg actatacgat tcc