LOCUS FO681327 11425 bp DNA linear VRT 17-MAR-2013
DEFINITION Zebrafish DNA sequence from clone CH1073-220M13 in linkage group 2.
ACCESSION FO681327
VERSION FO681327.1
KEYWORDS HTG.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Cyprinidae; Danio.
REFERENCE 1 (bases 1 to 11425)
AUTHORS Heath P.
CONSRTM Genome Reference Consortium
JOURNAL Submitted (16-MAR-2013) to the INSDC. Wellcome Trust Sanger
Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
grc-help@sanger.ac.uk Clone requests:
http://www.sanger.ac.uk/Projects/D_rerio/faqs.shtml#dataeight
COMMENT -------------- Genome Center
Center: Wellcome Trust Sanger Institute
Center code: SC
Web site: http://www.sanger.ac.uk
Contact: grc-help@sanger.ac.uk
--------------
Large depth read coverage across a clone can lead to sequenced
reads
occasionally displaying inconsistency over the length of
mononucleotide
runs and conserved dinucleotide repeats. Where this is found the
best
quality representation as per the assembly algorithm will be
submitted
Zebrafish sequence reads occasionally display inconsistency over
the length
of mononucleotide A/T runs and conserved TA repeats. Where this is
found
the longest good quality representation will be submitted.
Any regions longer than 1kb tagged as misc-feature "unsure" are
part of a
tandem repeat of more than 10kb in length where it has not been
possible to
anchor the base differences between repeat copies. The region has
been
built up based on the repeat element to match the total size of
repeat
indicated by restriction digest, but repeat copies may not be in
the
correct order and the usual finishing criteria may not apply.
CH1073-220M13 is from a Zebrafish Doubled haploid fosmid library
VECTOR: pCC1FOS-CHA_PmII
FEATURES Location/Qualifiers
source 1..11425
/organism="Danio rerio"
/chromosome="2"
/mol_type="genomic DNA"
/clone_lib="CHORI-1073"
/clone="CH1073-220M13"
/db_xref="taxon:7955"
BASE COUNT 3605 a 2040 c 2107 g 3673 t
ORIGIN
1 ttcctggcag gtgtgttgaa gcaagttgga gctaaactga gcagaacacc ggctctccag
61 gactgagttt gaacacccct aggctaatgg gtctgtacta gttttaaagg aatagttcat
121 gcaaaaattg aaaacattct cactatttaa tcacccttaa gtgggtctaa aacatcatga
181 gtttcttctt ttttcaaaca caaaagaaga tattttgaag aaaacctgta aggaatgact
241 tcctcagtag gaaaaagagt gagaaaagta cgacagaggg gtgacacggt ggcacagtgg
301 gtagcacgac cgcctcacag caagaaggcc gctagttcaa ctcccggctg ggtcagttgg
361 catttctgtg gggagtttgt atgtactccg tgttggcgtg ggtttcctct gggtgctccg
421 gtttccccca gagtccaaag acattcatta taggtgaact gaaaaagcta aatcggctgt
481 agtgtgtgta agtaatttaa aaactgaata aatatagatt tacacacatt tacacaagta
541 aataaacaga atcaatgatg ggcttagaat ctgtggaatt atgcgcggat agattctagt
601 catgttgtca gtataacagt gtactctgga ggggtgttct gatgcaaact gtggcaattt
661 tttatttatt tatttatttt ttgctgtttg tactgtaatt tgttcccaga tcatgttatt
721 gtgatacaga aaggaaaata cagcactgca ttggacaaag aaaaaactaa acaaaagtag
781 aaatgtgaac ataggacaat ctcctttcag atgtatctga cctgggagca attcaccaat
841 tatagattta gaaaaaaagt ccatttaaaa aaaaaaaatg tatagaaaaa tgcattatga
901 ctaaatatta tgacttgttc aacttcttta atatatatat atatatatat atatatatat
961 gacttgacat taaaaaaaat ttcaccaccc actgatcatt tttaaaagac aaaattgtgt
1021 tgttggaaat tgtattttat atatttaaat ttgacttttg catgctaaaa gtacctgagt
1081 aagagacctt ttacttgatt tgggtcatta aaataactct gactaccatg atataggtag
1141 cctatacctg ctgtagtcaa cctaaaacct acagtagttt gacatataag accaaaacaa
1201 tactcattct tgtcttagga catttttatt aggcagataa taataaatac aggaataata
1261 ggaataagga ataataataa atacagttat gtaacaacca taacattacc attatgtctt
1321 aggacatctt tgattaacct tttattatat acaccaaatg ttgactaatg aaggtacaat
1381 tataactatt tatttgttag actactttac tgtcaaacca tgtagcatac aaatgcattt
1441 aacagactta tatcacagtg tattgctgta gagaaccaat aaagcacgag acaggtgttt
1501 agaaagagta tagtttattt agtttgacct gcaaacttat ctaaacaaga taaactttca
1561 gaaaacagca gggaaacatt atacaatata aacattacac aaatataacc cgcggttgtc
1621 ttcaacggtt gtcttcattg tcttcagctc tgctgaaaaa caaagcaaaa cattacaaca
1681 gtcagacata cagttaaatc attacagtta ccatggtttc tattttaaac tatagtaaac
1741 taaagtttga aaccatagtt taaaatagac gatgagtggg cctcgctgct cccacccacc
1801 ataaccctcg cagcgttacc ggtcttccgt atttccctga gggtccttag gacttgtatt
1861 gctccctgcc tagggttcac aagccgcctc gccccaggga gtgcacaagc taaccgggca
1921 ccagtctgtg ccagtgttca ctggaatgtt gcttggcggc aaatttcgag caagaaacac
1981 gtaatattct tcgcaacatt tcgtttatgt acgcaaaccg caggtaagga accgcagcac
2041 agacgcgccc gagtgaagct tcactcgtac cgtcggtatt aaactcacct tggtcaagta
2101 caaacagcaa caccgagtga actgacaaca ctgaagcagg tcgcacacca gaagcggcgc
2161 tcggcggcgc gccgcgcagc gccacgcagc gccatgtatt ttagaattct aaacataggt
2221 ttctatcagg atacacacac cggcgccgca agtcggcggc tgtcggcggc gcccggcgac
2281 ggctcaggac gcagttcatt tttcagccgc gccacagagc gccatctgat tagtttcatg
2341 ttaaatatca ttcgaatgtg cgcgtctggt gtgtgatacc ttaaactgtc atgtacgcgc
2401 cgtgtcgcgg cgccgagcgg cgcttctggt gtgcgacctg cttaagagaa ccgacgagct
2461 ttaaagggac gcagatgcaa atgtttacaa tgtgacatca ctgctgtaag tctcgttgtc
2521 atggtgaaga gagcgaacct gattggagca ctatgattgg agcacacagg ctcgggaatt
2581 tccgtcacgg caagttgcgg tcggctgtgg acaaaaacat attaaatata ctgaatatat
2641 atttttacat tttttgtgct gtgtaatatt aaggggatgc agtagattat ggagacagat
2701 gaatataatt aagatgcggg acattataaa agaaagtgag cccggctagg acacaatgct
2761 ctgaccaaca ggggcggact ggccatctgg caattctggc aaatgccaga agggccggac
2821 catttttttt aaatgtgggc cggtcagttt tttgttttta ttttttattt tattattatt
2881 ttttatatgt attgttttta catgcaggca gcttttattt cgtgcaacat gtgaatatta
2941 tgatgacata gatgatggta ataatagtaa atgttaagca tttggcccaa tcggtgatag
3001 tttcgagagg ggccgactca atcaaaggtt acgcggagat aatcaaaatc tggcaagaat
3061 gtcaaacaaa cagtacgtat ggtaatgtag gctggtgtgg ctatagtgcc aaggctgaat
3121 ttttgtccca gtccgtccct gctgaccaat gatatatgtt ctaacttttt aggcctgtag
3181 ccagaggggt tcggaagacc caccccacac tgacaaaggt ccagaatttg tccaatacat
3241 gagctcattt gtcctatttt gactgctatg ccatcataaa taatgaaaat aatccatcga
3301 aaaaggcttt aagaccaatc ctctgtcggc tgttgcttcg gtggcacaat aatcttatgt
3361 aagagaggtc ttctttcact actgtattgt ttttaaacag agaaaacatt ttacaggtaa
3421 ttttgttcta agtcttggac cttatttctg aaataaaaat gagcaataaa aagatgtgaa
3481 gcagcagaag cagaccatat taaactaatt taaatatatt ttggctattg ttgatatcca
3541 ggaattttca aatgtacttt ttattttacc aaagaaacta gaaaaaatct gaagaattaa
3601 tttttattgt tttattatta tgttttcatt atatttttat tgatttttgt caatattgcc
3661 aaattgtgac tgaggacaat tgaatgtgct ggccagtttg ttttctgtct aataaatgat
3721 agtgtgctac agttttttgt tgtactttaa aactttaaca gattgctatt ttttcctaat
3781 gatacatgat ctaataaatt tgtattttaa aaattagtct tgttttaatt tgttttattg
3841 caattttttt aggaaatatt tttagtacat caaaaagtgt gattatgatg acatctgact
3901 agctaatcca gcaaaaataa ataaataaaa aaaatcacta aaatgcagta tttaaatctt
3961 atagtgaaat agaaactgag gtgtataact gcaaataggt ccactttttt ttgcaaaaaa
4021 gaaccactcc tttcaccagg ctggctacgg gcctgtaacc ccaaccccaa tttaactgcc
4081 tataatctaa tgagagttag ttggcatgca atataacttc aattcaacaa actgaccatc
4141 aaaataaagt gtgataatag tttattgtat tcatattaat tgaagtgatt gtttctaata
4201 aaaggatgcc atacatttaa gctaattcta aaaactaaaa aagccactac ataaaggaga
4261 aaatgcagtt gcaggaggaa actatttctc cttaatggaa gtttctgagc acagaagact
4321 ttttcctttg tcaatgaagc gagtgaataa tatgccaaag gtaacacttc atttttccat
4381 cccatgttta aatacacttt aaacagcagc tatgctaata attatttact tattctctat
4441 ttgcacctgg agatactcat cccaaggcct ccagagacta tgcagcacca ttgatgcgat
4501 ccaaaacctc tgaagagatg atgccaaggt atccataatc ctggaccagg ccatatcctg
4561 agcaaatgca ggaacggaga gcatgaaact gattcctgaa agatcacagt gacagacgag
4621 tctctgcact gatcctgtgg gccagcctga acacctgcag cttctccacg atggacatcc
4681 agtgttctcc agggccaaga cagcggctct gcacaagacg tttggccaga tgagaaatgt
4741 tcaattgccc aactgagcct ggtttctctc aaggtttttt tcctgcactt tcatcagttg
4801 gtgaagttgg ttcctcgcca ctggcttgct tgttttgtga aatgtggagc tgcgcactga
4861 tggataaact gaactctgaa aactggactg acagttttaa tttacaaatt aattaattaa
4921 cttcaatgtt aagctgccta atctacatat aaaagtgcta tagaaatcaa cgtgaactga
4981 attgaaaata aaagagagtc gtcttatttt cagaatattg atttaatcac acatacatgt
5041 catgcagtcc atccagaaag aaaagtgtca tcagtaattt catcccgtct ctctttcttt
5101 tccttcaacc agaatcttcc aaaaacacca tgtactgttg gaatgatcca gcgcctctgt
5161 ccattggtgg aactctctgt caatcactca tggagttact attacacagt aataaaaaaa
5221 cattgctatt tatttatttt aggttttcat taaatgtgtg gcattcccca tgaacatcaa
5281 ttaattatcc ttcatgcact gaaaagggaa gaacttaagg actaataaca caccaagcgc
5341 tcttaaatgg tccttgtgac gtcacttaaa ggtataaaac acccaatgca gctgaaaaaa
5401 aactatacgg aaggttgttg tgtcctgtca ttcacaagtc ataacgtttc ttttaacaat
5461 agcaggagtg tgtaaaatct aaacattaat atttaaggct agctttaatg agaactttac
5521 ataatttgaa gtcagactaa gcaacaaatc tctaatgtca tcaccgatat aataagttat
5581 taacatatgc agctcactcc gtcatcctgc taacctgatt ggctgatcag taacagtggg
5641 agcgcaagca agcaatgata tcacacacaa cgacatatta gtgtggattc aagcagaata
5701 aagtacaaat aatcaacaca tgagctttaa atacaacaca aatgagcttt taaatatgac
5761 tttcgatatg caagaagtga aatgtgtgaa cagcaggaca ggacaacctt cgggtattat
5821 atttgcttta aaaaaatgca aatcaatcgc ctttgcgaca ataaattgag atgcttccaa
5881 ctttagccta gtgtagaggc ttggttacac atgtctacaa tcctctccac cttcccctaa
5941 acaaccgtta accattacag aaagtaaaaa ccatcagttt taagatctga ccctgttaac
6001 tcaggagttt gcagtgatac gcacgatcga tgctctctta ctctggtatt tgttttctat
6061 tcaagcttgc tgcagtctag actctggcct gtataaagtc aaggcaggag cgaggtgttc
6121 tgcgcagtta tcaggcagta gtttttaaga ggttacagat gtgcagctga agactgcggg
6181 tgcgtttggg ttgattagag ctgattgcac aggaccgcgt caactgttca cattgcttac
6241 gtttatttct tgatttcctt tttttaaaat gtcatgtttg gtgcgtgtgt gagtgcaatt
6301 ttcataaaat aatttgcttt ggagggaggg aaggaggggc gaacttgatg gggagtggaa
6361 ctgtacagcc atgaatattt cgattcgcat gtccccccat gtgcagcagc aggagggatt
6421 atgttaatgg aatgacaggt ttccatgaag acatttttgc attcttgcag cttcggtagt
6481 gttgggagaa aaatcgtctt cagctagagg agagaaagaa ggcagtgaga atgctggacg
6541 caataaacca attttaacag acaaagggat tcttgaatta actcacaaat ccttctctac
6601 aaacattgca ttatttttga tgttgcacgt ttcaaagctt tcactcacat taaaaaaata
6661 aatcatggca aatcactcaa actcaagtca ttctaagtag ggctacacga tattggaaaa
6721 atctaatatt gcaatatttt ttcattttgc aacatatttt gtggtatttt ttattttgca
6781 atatttctta ttttgcgata tatattgtga tattttttat tttgtgacat attgtgatgt
6841 tttttgattt gagataaata ttgtgatgtt ttttgatttg agataaatat tgtgatgttt
6901 tttaaatttg cgatatatat tgcaattttt tgattttgca atattttttt attttgcgat
6961 acatattgca aattttttta ttttgcgatg tatatatata ttgcaatttt ttattttgcg
7021 atatatattg caatattttt gtgatattat cggtatattt ttatattgcg atatatatag
7081 tgattttctt tattttgtaa tatataaata ttttgcgatt ttttttattt tgtgatatat
7141 attgcaatat tttgttgtga tatatgttgt gatttttttt attttgtgat atatgtggca
7201 atatttttat tttgcgatat atatagatat tttttatttt gcgatatgta ttgcaatatt
7261 tttaaatttg cgatacatag caattttgtt attttgcgat atatatatat atatatatat
7321 atatatatat atatatatat atatatatag atacattatt attttttacg attttattat
7381 tttgcgatat ggctattgca atatatttat tttgcgatat tgcaatgttt catttatata
7441 tatatatagt gatatttttt attttgcgat atttatatat attgcaatat ttctttattt
7501 tgcgaaatat atgctttttt tgtattttgc aatatatact gcaatatttt ttttgtgaat
7561 attgtgattt gaattttttc tctatttaga aagaattgat aatgttatat ggattgggat
7621 ctttgccatg atgtcagtaa ataatatttt actagatctt tttaaagaca cttctatata
7681 gcttaaagtg gcatttaaag gcttaactag gttaattagg ttaactaggc aggctagggt
7741 aattaggcaa gttattgtat aacgatagtt tgttctgtca actatcggtg aaaaatagct
7801 taaagaggct aaaaattatg tccctaaaat ggtttttaaa aaattaaaac tgcttttatt
7861 ctattaaaaa taaaacaaat aatactttct ccagaaaaaa aatattgtga tgtgaatttt
7921 ttctcttatt atcagacaaa ctgtgaaaat gtccttgctc tgttaaacat catttagaaa
7981 acatttaaaa aagaaaagaa aattctaagg ggggttcata attctgagtt caactgtata
8041 tatacacaca atatatcact ctttattaaa tattttttac ctaaagaatt aggtaaaaac
8101 agaaaagtaa cacaagtgga atattaagct tttttttttt ttacttaaac cacagcacac
8161 gcaaactagt caaagatgtg ctccactgct cttttgtgtg aaagctgctt cagttcaagc
8221 agtgacttcg acagcagaaa gagtgaaact agcactgctg gggcatgcga cacagcatag
8281 ccttttttta agcccttttc tctttcgccc aaaaactaaa aattcagtgt atccctaata
8341 agcagactca aagaagaaga aaacagcaca aacctcttct cttgtttagt gccacctcct
8401 ctgataggca taggttggct gttctggtag aggacaccac cacctccacg cagcacattg
8461 gggtgtgtag gagaagctac aggttgctgt ccaggcctga ttggtttagc tacaatcaaa
8521 gaaaaagaga gaattcgtca ttatttccta tgtgtgaaca tgaattaatt ctaaacaaac
8581 caccgacagt cacagcatta tttctgtaag tgtgcagtca cctatctgtg cggagtgtcc
8641 tctgcgggcc atgtttttgg ctctgacggc ctctttgatg cggtccacct cctgctggta
8701 gcgcttgcgg tcacgggctg cgttctcttt ggcctctttg agcgcagtct ccagagcctt
8761 cactcgctcg gctgtggccc gcagacgctt ctccagttta ggaagctcac agcgcaggtc
8821 ggcattatca cgcaccagct gtgtgagaga gaagattcat tctttaatat caacacttga
8881 atacatcatt ttcatcttcg ctgtattcta tgcttttatt ttagtaagca tgccatctat
8941 ctctgtggtc cccaaccact gggatgtgga tcggtaccga tcggtggatc aattggtgcc
9001 ggcctgcaca agaaatcatt aattatttca gtttaattta ttatcagagt ctaaatgatc
9061 tttattttga aaactctttt attttgaaga atgaccgtat tctctcggtt acatctcgat
9121 cacttcagtg ccaaaattta acccacaagc agcaaaatga gtaagtaaca gtcatctttg
9181 gaaagtttct ttgctataag gggaaaaagc ccagtgaaga acccacgaac agcaaatcag
9241 gtgaatctag cctgtgcaag atcaactgct agagatcgct aatgacagcg gccttttaag
9301 ggctgttcat atatatagtg tcttttctaa agtttgcgca agttcataat ttccagtaga
9361 ggcgtgcggc ttgcgcgtgc aagtagcatg acgctcttgg atgaatctga tgcacccaga
9421 tgaatgaatt ctgcgagaca gaattctcac atgacaagaa ctgaccgatt agcgtaatac
9481 tttgtatgga acatacacat ttcggtagac ttattatctc agacaaacac agaacaccta
9541 aacactgcag tgctttgtca ttttttccat gaataaaact tgtatcagag tgacagcaaa
9601 gttaattgca atagcagcct taaagtcccc cagcctcccc cctcgggccg cgataaaatt
9661 gtcaagggtt gagcggtctg cagtaataaa aaggttggag accactgatc tatctcagat
9721 ggagagaagc tagctcattt ttttatgact tctagactag attactgtaa tgctgttcat
9781 taggtttata tataataact ttacatgtta aaagctacta gttactagta aaagatttta
9841 gtaaaatttt atatttatgg taactaacaa acttaacttt tctgattttg attgtaatgc
9901 gataatgagc acctttcata atgctgcttt gaaacaataa acttgaataa atcgtttatt
9961 gttttgctct ttttatctga aaaggcttta ggatatttac aaagtatttg tcatgaagca
10021 gcaaaaaatg aacaaatcat taacccctgt gtgtcaattt caaaaacaaa agttgcacac
10081 agacatacag aggacaaaaa cattttaaaa atgtaaaagt atcacattca atattatttt
10141 catcagttta acatcagtcc taataaccac caaatattca tttatttaaa aggttttata
10201 ctttaaataa cataattttt ttctttatat ttacaaaatt ttactgtttt ctcttatttt
10261 ttcttaactt aaggctaaaa agatagtctt tattatttta gctcatgacc agaatcattt
10321 agcctgcagc gctaaaaaaa agacttgcca accaaatgga agccagttaa caaataagga
10381 aaaaaaagga tctgattaaa tggcactgtg atgaaatatt acagtttcaa tggggacatt
10441 tttaccctga agctcctgag tttttgtaca gagtataaaa cagattgata aaagaatgtg
10501 tgtgaaatat tcaaatctta tcctttttaa attcccattt ttgctgtttg catgccaaaa
10561 tgattataaa aaaattaaaa gtgtccatta ggatgcgaat cgcatctagg agtcttttct
10621 ggttagcatt tacctgtttg tggaccttag tgagctgttc gagattgttc tccaggaaag
10681 agatcttctg cttctgagca gcactgccac cagtctcatc agagtccatc tctgcactct
10741 atacaaacac acacacacaa gtaaacaccc tttagttaaa caaccaccaa actatttaca
10801 tggcatcaca tgttacgcgg cagatttaaa tttactttca gaaagataac tggcccaaat
10861 tagatatgaa atttgagagg aagatcctga catccaatcc taccttttta acacgagttg
10921 ccagatcctg aacaaacaat ttcctgaggt tgtgcaaagt ctgcagctct ttagcctgaa
10981 ataacaatga caattcacag cgtttaaagt gacaatattt aaaaatatac atgcaaatta
11041 atttgaagcg aggaatagca ctcaccacag tctcttccaa gcctttcaga tcttgtctgg
11101 cctgttccct gcggtcctgc atcatcctgt agaatgaaca aaaaaccacc agctttaatg
11161 aaagtactat tcatgctatt ttaaatttaa gactcacaca tattgtatta acaatgttaa
11221 attaaaagtg tatattcatg catcatgcat gcaggtcttt agatatagaa caaaaagaag
11281 ggaattagga agagtttcat aaaccacagt ggttgaagat gaacagaaaa gactgtgtaa
11341 tacatacgtg agctcatgca gtttgcggct cttctcctgg tcggtggatt tgagtttctc
11401 atgttccacc cttaaacgct cctgt
//