LOCUS FO081932 9918 bp DNA linear HTG 13-JUL-2012
DEFINITION Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone
WTSI_1061-42A11.
ACCESSION FO081932
VERSION FO081932.2
KEYWORDS HTG; HTGS_PHASE2.
SOURCE Sus scrofa (pig)
ORGANISM Sus scrofa
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae;
Sus.
REFERENCE 1 (bases 1 to 9918)
AUTHORS Kerry G.
JOURNAL Submitted (13-JUL-2012) to the INSDC. Wellcome Trust Sanger
Institute, Hinxton, Cambridgeshire, CB10 1SA, UK. E-mail enquiries:
grc-help@sanger.ac.uk Clone requests: Geneservice
(http://www.geneservice.co.uk/) and BACPAC Resources
(http://bacpac.chori.org/)
COMMENT -------------- Genome Center
Center: Wellcome Trust Sanger Institute
Center code: SC
Web site: http://www.sanger.ac.uk
Contact: grc-help@sanger.ac.uk
-------------- Project Information
Center project name: fSY42A11
--------------
* NOTE: This is an unfinished sequence. It currently consists of 3
* contigs. The true order of the pieces is not known and their
order in
* this sequence record is arbitrary. Gaps between the contigs are
* represented as runs of N, but the exact sizes of the gaps are
unknown.
* This record will be updated with the finished sequence as soon as
it is
* available and the accession number will be preserved.
*
* 1 4992 contig 4992 bp long
* 5093 7572 contig 2480 bp long
* 7673 9918 contig 2246 bp long
FEATURES Location/Qualifiers
source 1..9918
/organism="Sus scrofa"
/chromosome="Y"
/mol_type="genomic DNA"
/clone_lib="WTSI_1061"
/clone="WTSI_1061-42A11"
/db_xref="taxon:9823"
misc_feature 1..4992
/note="assembly_fragment:contig_00001"
misc_feature 5093..7572
/note="assembly_fragment:contig_00002"
misc_feature 7673..9918
/note="assembly_fragment:contig_00003"
BASE COUNT 3167 a 2191 c 2036 g 2324 t
ORIGIN
1 tgtcagggac agagcccact cccttccagg agggaacttt caataccctc acattgcagg
61 catcatcaca gggctcctgc aagatcagac aatcgaccca cctttccttc cttatgactg
121 tagacacaac aaacacactg gcactggccc caggcaccac actcccagga agccctccag
181 gagagggagg gcttgttctt atccaactgt ggaaaaggca cctgaaatag accggttaca
241 tctcggttaa aaaggcctct gtttggaggg ctcccctgtg gcttaggata tggaaatatg
301 tattcagaag tgtggagcgg aaaatgcccc attgagaatg tcttcttcag gggttccatc
361 cagggcctcc tgcttggggg agagcattgg ctcattgatt tcttgtttgt gcaccgggat
421 gtcttgtttc aaatggccat gaagtgcaag tcttttttca tacttagcaa ctcccttgag
481 acaaaatata ctttaaatat gcatatcaga caatatagac tttaaaacaa aagacataaa
541 gaaagacaaa gaaggacact tgttaatgat taagggatcc atccaaggag aggatattac
601 tatcatcaac gaatatgccc caaatataag agcacccaga tacatacaac aaatattcac
661 agacataagg ggagatattg atgagaatac aatcatagta ggagacccat atacccacct
721 cacatcaatg cacagatcct ctagacagaa aaccaataac gcaacagaca tcctaaagga
781 aacaatagaa aaggtagact tcattgatat cttcaggaca cgacatccaa aaaaacagaa
841 tacacattct tctcaaatgc tcatggaaca ctctcaaaaa tcgaccactt cttgggacac
901 aaagcgaatc tcaataaatt taagagcgta ggaattatct caagtatctt ctctgaccac
961 aaggccatga aattagaaat cagccatggg aaaaggaaag agaaaaaacc tactccatgc
1021 agaataaaca acatgctact aaaaaaccaa tgggtcaatg aggaaatcaa gaaggacatt
1081 aaaaactacc ttgaaacaaa tgataatgaa gacacaacct ctccaaatcg atgggatgct
1141 gcaaaagcag tgctcagagg gaaatgtata gcaatccagg cctttctcaa aaaagaagaa
1201 agatcccaaa tggacaaatt aaccttccac ttaaacgaat tagaaaaaga agaacaacgt
1261 gtcctaaagt cagcaggatg aaggaaatta taaagatcaa agaagaaatc aataaagtag
1321 agactcaaaa aacaatagag aaaagtaata aaaccaagag ctggttcttt gaaaaggtga
1381 acacaatgga caaacccctg gccagattca ctcaaaagag gagagaaaga acccacataa
1441 ccaaaattag aaatgaaaaa agagaaatca caacggatac agcagaaata caaaaaccct
1501 aagagaatac tatgaacaac tgtatggcaa caagattgac aatctgtaac taatggacaa
1561 ttttctagaa tcttacagcc tgccaaaact gaatcaagca gaaacagacc aactggacag
1621 accgatcact agaaatgaaa ttgaagaggt cataaaatca ctccctacag ataaaagtcc
1681 aggaccagat ggcttcacag gggaattcta tcaaacatat aaagaggaat tggtgcccat
1741 cctcctgaaa ctctttcaaa aggtggaaga agaaggaaca ctcccaaaga cgttctatga
1801 tgccaccatc accctcattc caaaaccaga cggagatacc accaaaaaag aaaactatcg
1861 cccaatatca ttgatgaata tagatgcaga aattctcaac aaagtcttag ccaaccgaat
1921 ccaacaacat accaaaaaaa ttatacacca tgaccaggtt gggttcatcc caggttcaca
1981 aggatggttc aacatacaca aatcaatcag catgatacac cacatgaaca aaacaaaagt
2041 caaaaatcat atgatcatct caatagacga agaaaaagca tttgacaaag ttccacatcc
2101 attcatgatc aagaccctcg ccaaagtggg tatagaggga acattcctga atatcatcaa
2161 agccatttat gagaaaccca cagcaaatat aatcctcaag ggggaaaaac ggaaagcctt
2221 ctcactcaaa tctggaacca gacagggatg cccactctca ccactgctct tcaacatcgt
2281 tttggaagtc ctagccacag caataagaca aacaaaagaa acaaaaggca tccatatagg
2341 aagagaagag atcaaactgt ccctgtatgc agatgacatg atactgtacc tagaaaaccc
2401 taaggactca atcccaaaac accttgaact gattaataaa ttcagcaaag tagcaggata
2461 taagattaac cttcagaagt cagttgcgtt tctgtacacc agcaatgaaa cattagaaaa
2521 ggaatacaaa aatacggtac cttttaaaat tgcacctcac aaaatcaaat acctcggaat
2581 acacccgacc aaggaggtaa aggacctata tgccgagaac tataaaactt taatcaaaga
2641 aatcaaagaa gatgtaaaga aatggaaaga gagtccatgt tcctggattg ggaaaatcaa
2701 tattgtaaaa atggccatcc tacccaaagc aatctacaga ttcaaggcaa tccctatcaa
2761 atgacccatg acattgttca cagaactaga acaaactatc caaacattta tatggagcaa
2821 caaaagaccc agaatcgcca aagcaatcct gagaaacaaa aaccaaacac gaagcataac
2881 gctaccagac ttcaagaaat gctacaaagc cacagtcatc aaaacagtgt ggtattggta
2941 ccaaaacaga cagacagacc aatggaacag aagagagaat ccggaaagaa accctgacac
3001 ctagggtcaa ttcatcttgg acaagggagg caagaacatc aaatgggaac aagaaagtct
3061 attcagcaag cattgctggg aaactggaca gctgcatgca aaacaatgaa acgagaacac
3121 accctcacac catgcacaaa aagaaactcc aaatgcctga aagacttaaa tatacgacag
3181 gacaccatca aactcctaga agaaaaccta ggcaaaacac tctcggacat caacagcatg
3241 aatattttct caggtcggtc tcccaaagca atagaaatta gagcaaaaat aaacccatgg
3301 gaccccttca aactgaaaag cttttgcaca gcaaaggaat cccaatagaa aacaaaaaga
3361 caccttacag agtgggagaa aatagttcca aatgatgcaa cggacaaggg tttatctcta
3421 gaatatataa gcaacttata caactcaaca gcaaaaatac taatcaatca atggaaaaat
3481 gggcaaaaga cctgtataga catttctcca aagaagatat acagatggcc agcaaacaca
3541 tgaaaaaatg ctcaacttcg ctgattataa gagcaatgca aatcaaaact accatgagat
3601 accacctcac accagtcaga atggccatca ataataaatc cacaaataac aagtgcctcc
3661 tgcactgctg gtgggaatct cacctggttc agccactatg gaaaagcatg tggagataag
3721 ttagaaatct atacataaaa cttccatata accctgcaat cccactcttg ggcatttatc
3781 cgggaaaaac tctacttaaa gaggcacatg cacccgcatg ttcattgcag cactattcac
3841 aatagccagg acgtggaaaa aacccaaatg tccatcgaca gatgattgga ttcggaagag
3901 gtggtatata tacacaaggg aatactactc agccataaaa taggatgaca taatgccatt
3961 tgcagcaaca tggatggaac tagagaatct catcctgagt gaaatgagcc agaaagacaa
4021 agacaaatac catatgatat aacatagctg gaatctgata tcaagcacaa atgaacatct
4081 cctcagaaaa gaaaatcatg gacttggaga agagacttgt ggttgcctga tgggaggggg
4141 agggagtggg agggatcggg agcttgggct tatcagacac aacttagaat agatatacaa
4201 ggagatcctg ctgaacagca ttgagaacta tgtctagata ctcatgttgc aacagaagaa
4261 tggggggggg aaagtaattg taatgtatgc atgtaaggat aaagtgaccc cttgctgtac
4321 actgtgaaaa tagaaaaaag aaaagaaaaa gacccattcc ccaaaggagc ctgaacatga
4381 aaccaatggc caatggagga agaacaacac acgagcatct ctttacatgg gaggaagctt
4441 ttccacggaa ggaaattcag gaatatcttt taacctgatt gccacaccat gccattggag
4501 aagatatagg taccatagca aggctttcaa acctgttttc cagtatggag cagggattgt
4561 aatggacaca ttttgggagt caggccagga aggagagaag actctggtac aagtgtgctg
4621 gtttttatca tttgtgggat atccacctta aacaaggaca cgtccttgga gaaattatac
4681 tgccattcac ggttcctgga atcaacagct cctttacctc tctatctcca tcttttgatc
4741 accttctctc tagctctctc actatcccct tggccccctt aaaatttctc ttgaatcctc
4801 ctgctacaag ttgacctgtg gtgataatgg atgaaatata ttagccaaga gaatggtcca
4861 agttatctca gagcattttc tccctgtcat cctatgtctg atcacatata aaatcagtgc
4921 tccagaaaga catcctgtgc tgtgtggaga caccccaact aggtcatcct tccacaacac
4981 ttcccatatt cannnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
5041 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnagccttgc
5101 tatggtccct atatcttctc caatggcatg gggtggaaat cagtttaaaa gttattccat
5161 agtttccttc agtggaaaat cctcctccca tggaaaagga tgctcatgtg ttgttcttcc
5221 tccatcggcc attgttttca tgttcaggct ccgtggggag tgggtctttt tcaatcccat
5281 attttctttc cacgtgagat tgtagactgt gtcttcctgg gaagcagtcc gtgaaccacc
5341 gtgttgagcc tgacgcacgt tcaggggaag agatatcctt ctgtagagag caggtgggca
5401 cagaggaggt ggagttgcct tccatctgag aaggtcaggc ccaatggttg ccatggcaat
5461 ggcatgatgc ccaccaagca ttgtgacacc actgaccctc tctgagaagt gaggcaagtg
5521 atgggctcaa agtgagagtc tgtcaccatc acgactcaat tgttggacat cgggcagccc
5581 gagctcatga tctggaggta tgtggataca aaattaaagg aggatccatt ggatgtattg
5641 gacaattgga ggatatgtat ttattccagg attcttctca gggccaccat tctcatcagg
5701 ctcctgagta aatatacact gctcaggctt gcgttttatt atgatatatc tgcaatggac
5761 cagtgagctt atcacttcca ctcttttcca acaggagata aaagactcct aagtatgacc
5821 gggatgatca atctcattcc agacctcaaa aaatgaaaat aggcccctct gccttcaaac
5881 aaggacgagg ccctcaatat caacccttag gaaatattgg aatgggggat ggacaattcc
5941 ctgcttctga acgtacacgt caatagatga aagcacacac ctgctatcca cagtttgaat
6001 tttcctgaga attaagctgg gatatgtctc gtggttttta ccaaggttga taagaatacg
6061 tcctgtctac tggggtgctg gatggaagtg gcgtgactag ttccactgct gacttgattg
6121 tggggtacac aattgtcagg aatttcagca gtccctcttc ttctcctctg tgagccatgt
6181 ggggaaggct acatgtgcag gtcttgaggt ttccctcttg gaggataggg gcctctggcc
6241 tgccaattga gggtctagag aaggaggagg attgtccaaa atggagactg gttttacggg
6301 accgaattct tgaattctat cgcattgtca ttgagacact gcagaaaggt gctcagaccc
6361 ctacttacat gccaattcac tgagacatgg agagtcggag acatcatatc ccatctcccg
6421 ttagaaagag tcgagagatc cacctcacca acaacctcat agacctgatc acacacgtgg
6481 agtgtgctgc atagaattga attctcacta ggtccttatg tgtaggtggt tgaaaagatg
6541 ttgatctcgg agtcaaatct gtgaccatgt agaatgcaat agcaatgaga tggttacctg
6601 tcagtgtgaa ggtccgacaa gggtaagata ggggtacatt gtgtaagttg gaatatctcc
6661 atacaaacag aggtgttatt tccggaaaac gggtttcata tttgatagga gtttggacga
6721 ctgatggaaa atcctggtga aagaatttga cggctctcct ggctgagata tgccaagctg
6781 gaccagcaca gataaccttg gatgaggagg attcgaaagc atgtgaagga ggaagaagcc
6841 aagagagaga gtgagagaga gagagatgag atttggattg aagccacatt ccagggcaaa
6901 ctgtcattcc caatcccttt tctgggtttt cgggtactat tagacacaaa ggctatatca
6961 ggactcttgc atgagatttt cactctttct tggcctgtct ctagaaatat gtcggttgca
7021 agctgttctc cctgctgggc acccatgtct tcacaaagga cacgaggtgt gtgtcaattt
7081 aaatgacacg ctctattttc cctaagcgga aaagtccctt cctattgaaa tggcaactca
7141 tagggtgttc ttcctcagtc gttccttgat ttcactctcc agtggacttt tgtttgggtg
7201 tttggaatga caacttttct ctccaaaagt tactctattg tgtaatcgtg tgaggcagtg
7261 cctgagaaag cacttgaccc agaagtgcta catatattat cagagatacg taatgctaga
7321 gacaattggg ttcgccagtg tgtggagatg ccttctttct caaaggtgta gtgccagagg
7381 gggccatggc actgatatga tgcccatgga gccttgtgac caaacaacct ctctgtgcga
7441 atagaggtgt gtaatgggcc atatgtggga tattctcacc ctcaaacctt gagagttcaa
7501 tgatggacac caggagctct tgctctggag gaatgtcgaa gttgatggaa aggaggatcc
7561 atcagatggg tgnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn
7621 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnctctatca
7681 tgatggatct ctgataacat gtgcggcact tcagggtcaa gtgctttctc agtcactgcc
7741 tcacacgaat acacagtaca gaatctcctt tggagagaaa agatgtcatt ccaaacaccc
7801 aaacaaagtc ccctgtacaa tgaaatcaag gaacgactga ggaaaaacac cctctgagct
7861 gccaattcaa taggaagggc cttttccgct tagggaaaat agagggtgtc ttttaccttg
7921 acccacacct cgtgtccttt gggaaggcat gggtgcccag cagggaggac tgcttgcaac
7981 cgacatattt ctagagacag gccaagaacg agtgaaaatc taacgcaaga gtcctgatat
8041 agcctttgtg tctaatagac cccggaaaca cagacaaggg cttgggaatg acattgtgcc
8101 ctggattgta gcttgtatcc aaatctcatc tccttctctt tctctctatc tctctctctc
8161 actctctctc tcggcttcgt cctccttcat attccctcga atcctcctca tccaatgtga
8221 tctgttctgg tccagtttgg catatctcag acaggagagc agtcaaattc tttcaccaag
8281 attttccaac agtcttccaa actcctatca aatataaaag catttttcct gaaataattt
8341 ctctatttgt atggagatat tccaccttac acagtgtacc actatcttac cattgtcagc
8401 ccttcacact gacagataac catcccattt gtacggcgtt ctacatgatc acatatttga
8461 ctccgagatc aacatctttt caaccaccta cacataaggg accgagtgag aattcagtta
8521 tctgtagcac aagccacgtg tgtgttgagg tctctgaagt tgctggtgag gtggatctct
8581 cgattcactc taaggagaat taggaaatga agtctctgac tctccatgtc tcagtgactt
8641 ggcatctacg aaggggtctg agcacccttc agcagggtct gaatgacaat gcgacagagt
8701 tcaaggattc ggtcccctca aaccagtctc catttgggac aatcctcctc cttctctaga
8761 ccctcaattg gcaggccaga ggcccctctc gtccaagagg gacacctcaa gacctgccca
8821 aggagccctc accacacggc tcacggagga gaagagacac ttctcaaatt cctgacaact
8881 gtgtacccca caaaaaagcc agcagtagaa ctagtcaacc cccttccatc cagcacccca
8941 gtaggcagga cgtcttctta tcaacctgtg aaatacccac cagacgtatc ccagcgtcat
9001 tctcggacat ttgatactgt ggatagctag tgtgtgattt catctactga agtttatgtt
9061 ctgatgcagg gacttgtcct ttccccattc aaatttttcc tcagggttga tattgagggc
9121 ctcgtccttg tttgaaggca gaggggccta ttttcatttt ttgaggtctg gaatgagatt
9181 gatcatcccg gtcatactta ggagtctttt atcccctgtt ggaaaagagt ggaagtgata
9241 agctcactgg tccattgcag atatatcata atacaaaagc aagcctgagc agtgtatatt
9301 tactcaggag cctgatgaga atggtggccc tgagaagaat cctggaataa atacatatca
9361 tccaattgtc caatacatcc aatggatcct cctttaattt tgcatccaca tacctccaga
9421 tcatgagctc gggctgcccg atgtaaaaca attgagtcgt gatggtgaca gactctcact
9481 ttgagcccat cacttgcctc acttctcaga gagggtcagt ggtgtcacaa tgcttggtgg
9541 gcatcatgcc attgccatgg caaccattgg gcctgacctt ctcagatgga aggcaactcc
9601 acctcctctg tgcccacctg ctctctacag aaggatggct cttcccctga acgtgtgtca
9661 ggctcaacac ggtggttcaa gaactgcttc ccaggaatac acagtttaca atctcctgtg
9721 gaaagaaaat atgtgattga aaaagaccca ctccccaagg atcctgaaca ggaaaacaat
9781 ggccgatgga ggaagaacaa cacatgagca tccttttcca tgggaggagg attttccact
9841 gaaggaaact atggaataac ttttaaactg atttccaccc catgccattg gagaagatat
9901 agggaccata gcaaggct
//