LOCUS FD165522 778 bp mRNA linear EST 19-MAY-2010 DEFINITION CBZC7267.b1 CBZC: Normalized blue catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 4, AUJ_M) Ictalurus furcatus cDNA 5' similar to zebrafish RefSeq, XP_001339936.1, PREDICTED: similar to gastric mucin [Danio rerio], mRNA sequence. ACCESSION FD165522 VERSION FD165522.1 DBLINK BioSample: SAMN00164690 KEYWORDS EST. SOURCE Ictalurus furcatus (blue catfish) ORGANISM Ictalurus furcatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 778) AUTHORS Wang,S., Peatman,E., Abernathy,J., Waldbieser,G., Lindquist,E., Richardson,P., Lucas,S., Wang,M., Li,P., Thimmapuram,J., Liu,L., Vullaganti,D., Kucuktas,H., Murdock,C., Small,B.C., Wilson,M., Liu,H., Jiang,Y., Lee,Y., Chen,F., Lu,J., Wang,W., Xu,P., Somridhivej,B., Baoprasertkul,P., Quilang,J., Sha,Z., Bao,B., Wang,Y., Wang,Q., Takano,T., Nandi,S., Liu,S., Wong,L., Kaltenboeck,L., Quiniou,S., Bengten,E., Miller,N., Trant,J., Rokhsar,D. and Liu,Z. TITLE Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies JOURNAL Genome Biol. 11 (1), R8 (2010) PUBMED 20096101 COMMENT Contact: Liu ZJ The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences Auburn University 203 Swingle Hall, Auburn University, Auburn, AL 36849, USA Tel: 334 844 4054 Fax: 334 844 9208 Email: zliu@acesag.auburn.edu cDNA library sequencing: DOE Joint Genome Institute (http://www.jgi.doe.gov) Seq primer: M13 Forward. FEATURES Location/Qualifiers source 1..778 /organism="Ictalurus furcatus" /mol_type="mRNA" /db_xref="taxon:66913" /clone_lib="SAMN00164690 CBZC: Normalized blue catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 4, AUJ_M)" /note="Organ: mixed tissues from stomach, muscle, olfactory tissue and trunk kidney; Vector: pDNR-Lib; Site_1: Sfi IA; Site_2: Sfi IB" BASE COUNT 249 a 182 c 142 g 205 t ORIGIN 1 gaaaatgctc caatattaca tgcaacaatg gagtaatcat acatgagcat atgaaatgtc 61 aggatgcacc tttgcctgtt tgtgtaaaca atcacctgcc gaagaaagtc actgatgagt 121 ctgggtgttg ttccaaatat gaatgcgagt gtatatgcag tggctttgga gatccacatt 181 acatcacttt tgatggaaca tactacccat ttcaaggaaa ctgctcctat gtccttgtca 241 aagagataaa tccaaaatac cacttcagtg tcattatcga caacgtctac tgcgactcag 301 aagatggtct ctcctgtcct aaatcactga ctgttcacta caaatccttt aaaattttca 361 tgacgcagga tatttccaac ggaatggtca taaatctgat taaggtcaac aacaaccgag 421 tcctactacc atatgagaat gaggacttcc gaattacaga caatggtatc gaatcactcg 481 tggtgatacc agcaatcgat gcacaggtca ccttcactgg catgatgttt ttcatcaacc 541 tcccatggca aaagttccat ggaaacactg aaggacagtg tggaacatgt aataataacc 601 gtaccgagga ttgtcgccta ccaaatggca ccattatttc ctcctgtgaa aaaatggctc 661 catattggca cgtcagtaat aacaacagtg cctgtctacc accaaacccc aaaccaacac 721 cagtgccatg cacaaatgct ccaatttgtg aaattcttag cactaccttt aaggaatg //