LOCUS FD077018 639 bp mRNA linear EST 19-MAY-2010 DEFINITION CBFH18517.b1 CBFH: Normalized blue catfish cDNA library of stomach, muscle, olfactory tissue, and trunk kidney (mixed tissue 4, AUJ) Ictalurus furcatus cDNA 5' similar to zebrafish RefSeq, XP_001339936.1, PREDICTED: similar to gastric mucin [Danio rerio], mRNA sequence. ACCESSION FD077018 VERSION FD077018.1 DBLINK BioSample: SAMN00164684 KEYWORDS EST. SOURCE Ictalurus furcatus (blue catfish) ORGANISM Ictalurus furcatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 639) AUTHORS Wang,S., Peatman,E., Abernathy,J., Waldbieser,G., Lindquist,E., Richardson,P., Lucas,S., Wang,M., Li,P., Thimmapuram,J., Liu,L., Vullaganti,D., Kucuktas,H., Murdock,C., Small,B.C., Wilson,M., Liu,H., Jiang,Y., Lee,Y., Chen,F., Lu,J., Wang,W., Xu,P., Somridhivej,B., Baoprasertkul,P., Quilang,J., Sha,Z., Bao,B., Wang,Y., Wang,Q., Takano,T., Nandi,S., Liu,S., Wong,L., Kaltenboeck,L., Quiniou,S., Bengten,E., Miller,N., Trant,J., Rokhsar,D. and Liu,Z. TITLE Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies JOURNAL Genome Biol. 11 (1), R8 (2010) PUBMED 20096101 COMMENT Contact: Liu ZJ The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences Auburn University 203 Swingle Hall, Auburn University, Auburn, AL 36849, USA Tel: 334 844 4054 Fax: 334 844 9208 Email: zliu@acesag.auburn.edu cDNA library sequencing: DOE Joint Genome Institute (http://www.jgi.doe.gov) Seq primer: M13 Forward. FEATURES Location/Qualifiers source 1..639 /organism="Ictalurus furcatus" /mol_type="mRNA" /db_xref="taxon:66913" /clone_lib="SAMN00164684 CBFH: Normalized blue catfish cDNA library of stomach, muscle, olfactory tissue, and trunk kidney (mixed tissue 4, AUJ)" /note="Organ: mixed tissues from stomach, muscle, olfactory tissue, and trunk kidney; Vector: pDNR-Lib; Site_1: Sfi IA; Site_2: Sfi IB" BASE COUNT 184 a 151 c 137 g 167 t ORIGIN 1 ggattacaga caatggtatc gaatcactcg tggtgatacc agcaatcgat gcacaggtca 61 ccttcactgg catgatgttt ttcatcaacc tcccatggca aaagttccat ggaaacactg 121 aaggacagtg tggaacatgt aataataacc gtaccgagga ttgtcgccta ccaaatggca 181 ccattatttc ctcccgtgaa aaaatggctc catattggca tgtcagtaat aacaacagtg 241 tctgtctacc accaaacccc aaaccaacac cagtgccatg cacaaatgct ccaatttgtg 301 aaattcttag cactaccttt aaggaatgcc acgagtttgt cccgtaccag tattatgagg 361 aggcctgcaa ctatgacgtg tgccacatga acacccagag cattggttgt tccagtttgc 421 agatgtacgc tgaacagtgt gctatagcag gaatctgcat cgactggagg ccagccacaa 481 tggagtgtgt gaattcttct gcgaggagcc caaagtctat aaagcttgtg gacctcagat 541 tccattaact tgtgatttaa ggtttaacct caaatttatg aacacaccca gtgtatttag 601 tcctttggaa agtatgttct gggaaggctg ctactgtcc //