LOCUS FD022788 721 bp mRNA linear EST 20-MAY-2010 DEFINITION CBNI8747.g1 CBNI: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL) Ictalurus punctatus cDNA 3' similar to zebrafish RefSeq, NP_998569.1, lipase, gastric [Danio rerio], mRNA sequence. ACCESSION FD022788 VERSION FD022788.1 DBLINK BioSample: SAMN00164687 KEYWORDS EST. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 721) AUTHORS Wang,S., Peatman,E., Abernathy,J., Waldbieser,G., Lindquist,E., Richardson,P., Lucas,S., Wang,M., Li,P., Thimmapuram,J., Liu,L., Vullaganti,D., Kucuktas,H., Murdock,C., Small,B.C., Wilson,M., Liu,H., Jiang,Y., Lee,Y., Chen,F., Lu,J., Wang,W., Xu,P., Somridhivej,B., Baoprasertkul,P., Quilang,J., Sha,Z., Bao,B., Wang,Y., Wang,Q., Takano,T., Nandi,S., Liu,S., Wong,L., Kaltenboeck,L., Quiniou,S., Bengten,E., Miller,N., Trant,J., Rokhsar,D. and Liu,Z. TITLE Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies JOURNAL Genome Biol. 11 (1), R8 (2010) PUBMED 20096101 COMMENT Contact: Liu ZJ The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences Auburn University 203 Swingle Hall, Auburn University, Auburn, AL 36849, USA Tel: 334 844 4054 Fax: 334 844 9208 Email: zliu@acesag.auburn.edu cDNA library sequencing: DOE Joint Genome Institute (http://www.jgi.doe.gov) Seq primer: M13 Reverse. FEATURES Location/Qualifiers source 1..721 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /clone_lib="SAMN00164687 CBNI: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL)" /note="Organ: mixed tissues from stomach, muscle, olfactory tissue and trunk kidney; Vector: pDNR-Lib; Site_1: Sfi IA; Site_2: Sfi IB" BASE COUNT 231 a 141 c 150 g 199 t ORIGIN 1 gatcataaat ttttattggg tttgagtcca ttgatttata aagtaagtca aatgatcctt 61 ctaaaaaaag gagaatgctt tttggacagc ctttacaaaa tgtcaaatac aatctgacaa 121 tgaaggaaaa aagattactc tataattaga ggctaaaatc caacattcac ataaaacaca 181 gcgtctcctg tgaaacacaa tgggaaaagt cgtgactgat caacatatag ctcaataagc 241 actcggatac attcatataa gaaagcagct tttgtgttaa cagcatattt actaatcgat 301 taatgtgtta gatgaggtaa gaaaaatttg aggtaacaca aataatgtaa aagtaagtca 361 aatattagtc ggtctttgcc ataattccct gctaaggaat cgttgaggaa tgcatagtgc 421 tggttgttgt agttataaaa taaacctcca cattaaaagg cataaaaatc agtctcattg 481 ctaagagtta aaaggcggtc agacattctg tctcatcagc ttgatcagcg gttcgtacat 541 ctcctgtggg gcgtccaggc cccagatgaa gtccaggtgc tcccagtgct tgatgttgcg 601 atggaacacc aggttaggga tctgtgcgag cagcaatgcc acatcctttt ggtctgccag 661 cgtgtcgtgt cccccggacc acaccgctgt tggcaccttc atgtcccgca cgttgtacag 721 a //