LOCUS FD021816 700 bp mRNA linear EST 20-MAY-2010 DEFINITION CBNI7810.b1 CBNI: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL) Ictalurus punctatus cDNA 5' similar to zebrafish RefSeq, NP_998569.1, lipase, gastric [Danio rerio], mRNA sequence. ACCESSION FD021816 VERSION FD021816.1 DBLINK BioSample: SAMN00164687 KEYWORDS EST. SOURCE Ictalurus punctatus (channel catfish) ORGANISM Ictalurus punctatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus. REFERENCE 1 (bases 1 to 700) AUTHORS Wang,S., Peatman,E., Abernathy,J., Waldbieser,G., Lindquist,E., Richardson,P., Lucas,S., Wang,M., Li,P., Thimmapuram,J., Liu,L., Vullaganti,D., Kucuktas,H., Murdock,C., Small,B.C., Wilson,M., Liu,H., Jiang,Y., Lee,Y., Chen,F., Lu,J., Wang,W., Xu,P., Somridhivej,B., Baoprasertkul,P., Quilang,J., Sha,Z., Bao,B., Wang,Y., Wang,Q., Takano,T., Nandi,S., Liu,S., Wong,L., Kaltenboeck,L., Quiniou,S., Bengten,E., Miller,N., Trant,J., Rokhsar,D. and Liu,Z. TITLE Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies JOURNAL Genome Biol. 11 (1), R8 (2010) PUBMED 20096101 COMMENT Contact: Liu ZJ The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences Auburn University 203 Swingle Hall, Auburn University, Auburn, AL 36849, USA Tel: 334 844 4054 Fax: 334 844 9208 Email: zliu@acesag.auburn.edu cDNA library sequencing: DOE Joint Genome Institute (http://www.jgi.doe.gov) Seq primer: M13 Forward. FEATURES Location/Qualifiers source 1..700 /organism="Ictalurus punctatus" /mol_type="mRNA" /db_xref="taxon:7998" /clone_lib="SAMN00164687 CBNI: Normalized channel catfish cDNA library from stomach, muscle, olfactory tissue and trunk kidney (mixed tissue 2, AUL)" /note="Organ: mixed tissues from stomach, muscle, olfactory tissue and trunk kidney; Vector: pDNR-Lib; Site_1: Sfi IA; Site_2: Sfi IB" BASE COUNT 195 a 176 c 160 g 169 t ORIGIN 1 gagagtttga agtggtcacc gaggacggct acatcctgag catcaacagg atcccacacg 61 gcgtccaggg taaattccag caagacccca agcctgtggt gtaccttcag catgggctcc 121 tggctgcagg aagtaactgg gtgactaacc ttcccaacac cagccttggc tttttgctag 181 ccgacactgg atttgacgtg tggcttggaa acagccgtgg gaacacctgg tcaaaaaaac 241 acgtcagcct cacgcctaag caaaaagagt actggcaatt tagtcatgat gaaatggcta 301 agaaggacct tccagcagta ataaacttca tcacgaaaac cacaagacaa gagcagattt 361 tctatgttgg ccattctcag ggaaccacca ttgcctttat ggctttttcc acaatgccgg 421 agctggctaa caaaatcaag atgtttttgc actggcccct gtagccacag tagccttcac 481 agaaagtcca atgggcagac tgggtatcct cccagagttt gtcatctgga aattattcgg 541 gaacaaagac tttttacctc agagtgccct catcaaattt tttgccaccc atatctgcag 601 caaggaacca atcggcgtgt tgtgtggaaa catatttttc cttttgtgtg gttttgatga 661 aagaaacctg aacatgaccc gaacgcctgt gtacacgacc //