LOCUS FC456620 1042 bp mRNA linear EST 13-NOV-2008
DEFINITION Ssh-drought16 Soybean nodule 5 days after drought library Glycine
max cDNA similar to unknown function protein homologue to cytosolic
phosphoglycerate kinase, mRNA sequence.
ACCESSION FC456620
VERSION FC456620.1
DBLINK BioSample: SAMN00164565
KEYWORDS EST.
SOURCE Glycine max (soybean)
ORGANISM Glycine max
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50
kb inversion clade; NPAAA clade; indigoferoid/millettioid clade;
Phaseoleae; Glycine; Glycine subgen. Soja.
REFERENCE 1 (bases 1 to 1042)
AUTHORS Clement,M., Lambert,A., Herouart,D. and Bomcompagni,D.
TITLE Identification of new up-regulated genes under drought stress in
soybean nodules
JOURNAL Gene 426 (1-2), 15-22 (2008)
PUBMED 18817859
COMMENT Contact: Boncompagni E
UMR Interactions Plantes Microrganismes
INRA (1064) CNRS (6192) Universite de Nice Sophia Antipolis
400 route des Chappes, BP 167, Sophia antipolis cedex, F-06903,
FRANCE
Tel: 00 33 4 92 38 66 34
Fax: 00 33 4 92 38 66 40
Email: boncompa@unice.fr
Insert Length: 1043 Std Error: 0.00
Seq primer: T7.
FEATURES Location/Qualifiers
source 1..1042
/organism="Glycine max"
/mol_type="mRNA"
/cultivar="Labrador"
/db_xref="taxon:3847"
/clone_lib="SAMN00164565 Soybean nodule 5 days after
drought library"
/dev_stage="mature soybean, six weeks old"
/note="Organ: nodule; SSH method was used to isolate gene
specifically up-regulated in response to drought in
soybean nodule. mRNA were extracted from control plant and
from drought stressed (5 days without watering) plant.
cDNA obtained after subtraction were cloned into pGEMT
vector and sequenced with the T7 primer."
BASE COUNT 261 a 196 c 266 g 279 t
ORIGIN
1 gaggtcgtcc aaaaggtgta acacctaaat acagtttgaa gcctcttgtg ccaaggctgt
61 ttcaacttct tggaattgag gttacgatgg ccaatgactc tattggggag gaagttgaaa
121 agttggttac acaacttcca gaaggtggtg ttttgcttct agagaatgtg aagttctaca
181 aggaggaaga gaagaatgat cctgaatttg caaagaagtt ggcttctcta gctgatctct
241 atgtgaatga tgcatttggc actgcccaca gagctcatgc ttctacagaa ggagttgcca
301 agtacttgaa gccctctgtt gcaggattcc taatgcagaa ggagcttgat tatctagttg
361 gggctgtgtc aaaccccaag agaccatttg ctgctattgt cggtggatcg aaggtgtctt
421 ccaagattgg agttattgaa tccttgttgg agaaagttaa tgttctcttg cttggtggag
481 gaatgatctt taccttttac aaggctcagg gttattcagt tgggtcatct cttgtggagg
541 aagacaagct tagccttgca actacacttc ttgaaaaggc caaggctaaa ggggtttctt
601 tgttgcttcc aactgatgtt gtcatagcag acaagtttgc tgctgatgct aacagcaaga
661 ctgtgccggc atcaagcatc ccagatgggt ggatggggtt ggatattggg tcctgattcc
721 atcaagacat tttggtgaag cattggatac gactcanacc actatttgga atggaccaat
781 gggtgttttt gagtttgata agtttgccnc aggaacagag gctatagcca agaaactggc
841 anagctgant gggaagggag tgacaaccat cattgggagg aggtgactcc cttgcccctg
901 tggaaaangt tggnacttnc aaacnanatg anccncntct ccccctgggn ggnggngncc
961 nncntnaaan ctnctttnag ggnaaancaa ccccccnggg gnccntgccc nttganaann
1021 cttgnnnnaa aaannnttcn tt
//