LOCUS DQ926657 2158 bp mRNA linear HUM 13-JUL-2007
DEFINITION Homo sapiens Hox transcript antisense intergenic RNA (HOTAIR) mRNA,
complete sequence.
ACCESSION DQ926657
VERSION DQ926657.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2158)
AUTHORS Rinn,J.L., Kertesz,M., Wang,J.K., Squazzo,S.L., Xu,X.,
Brugmann,S.A., Goodnough,L.H., Helms,J.A., Farnham,P.J., Segal,E.
and Chang,H.Y.
TITLE Functional demarcation of active and silent chromatin domains in
human HOX loci by noncoding RNAs
JOURNAL Cell 129 (7), 1311-1323 (2007)
PUBMED 17604720
REFERENCE 2 (bases 1 to 2158)
AUTHORS Rinn,J.L., Chang,H.Y., Wong,J., Segal,E. and Kertesz,M.
TITLE Direct Submission
JOURNAL Submitted (28-AUG-2006) Dermatology, Stanford, 269 Campus Dr.,
Stanford, CA 94305, USA
FEATURES Location/Qualifiers
source 1..2158
/db_xref="H-InvDB:HIT000394652"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="12"
/sex="male"
/tissue_type="foreskin"
gene 1..2158
/gene="HOTAIR"
/note="Hox transcript antisense intergenic RNA; repressor
of HOXD chromatin"
BASE COUNT 635 a 486 c 555 g 482 t
ORIGIN
1 gactcgcctg tgctctggag cttgatccga aagcttccac agtgaggact gctccgtggg
61 ggtaagagag caccaggcac tgaggcctgg gagttccaca gaccaacacc cctgctcctg
121 gcggctccca cccggggctt agaccctcag gtccctaata tcccggaggt gctctcaatc
181 agaaaggtcc tgctccgctt cgcagtggaa tggaacggat ttagaagcct gcagtagggg
241 agtggggagt ggagagaggg agcccagagt tacagacggc ggcgagagga aggaggggcg
301 tctttatttt tttaaggccc caaagagtct gatgtttaca agaccagaaa tgccacggcc
361 gcgtcctggc agagaaaagg ctgaaatgga ggaccggcgc cttccttata agtatgcaca
421 ttggcgagag aattaagtgc tgcaacctaa accagcaatt acacccaagc tcgttggggc
481 ctaagccagt accgacctgg tagaaaaagc aaccacgaag ctagagagag agccagagga
541 gggaagagag cgccagacga aggtgaaagc gaaccacgca gagaaatgca ggcaagggag
601 caaggcggca gttcccggaa caaacgtggc agagggcaag acgggcactc acagacagag
661 gtttatgtat ttttattttt taaaatctga tttggtgttc catgaggaaa agggaaaatc
721 tagggaacgg gagtacagag agaataatcc gggtcctagc tcgccacatg aacgcccaga
781 gaacgctgga aaaacctgag cgggtgccgg ggcagcaccc ggctcgggtc agccactgcc
841 ccacaccggg cccaccaagc cccgcccctc gcggccaccg gggcttcctt gctcttctta
901 tcatctccat ctttatgatg aggcttgtta acaagaccag agagctggcc aagcacctct
961 atctcagccg cgcccgctca gccgagcagc ggtcggtggg gggactggga ggcgctaatt
1021 aattgattcc tttggactgt aaaatatggc ggcgtctaca cggaacccat ggactcataa
1081 acaatatatc tgttgggcgt gagtgcactg tctctcaaat aatttttcca taggcaaatg
1141 tcagagggtt ctggattttt agttgctaag gaaagatcca aatgggacca attttaggag
1201 gcccaaacag agtccgttca gtgtcagaaa atgcttcccc aaagggttgg cagtgtgttt
1261 tgttggaaaa aagcttgggt tataggaaag cctttccctg ctacttgtgt agacccagcc
1321 caatttaaga attacaagga agcgaagggg ttgtgtaggc cggaagcctc tctgtcccgg
1381 ctggatgcag gggacttgag ctgctccgga atttgagagg aacatagaag caaaggtcca
1441 gcctttgctt cgtgctgatt cctagactta agattcaaaa acaaattttt aaaagtgaaa
1501 ccagccctag cctttggaag ctcttgaagg ttcagcaccc acccaggaat ccacctgcct
1561 gttacacgcc tctccaagac acagtggcac cgcttttcta actggcagca cagagcaact
1621 ctataatatg cttatattag gtctagaaga atgcatcttg agacacatgg gtaacctaat
1681 tatataatgc ttgttccata caggagtgat tatgcagtgg gaccctgctg caaacgggac
1741 tttgcactct aaatataggc cccagcttgg gacaaaagtt gcagtagaaa aatagacata
1801 ggagaacact taaataagtg atgcatgtag acacagaagg ggtatttaaa agacagaaat
1861 aatagaagta cagaagaaca gaaaaaaaat cagcagatgg agattaccat tcccaatgcc
1921 tgaacttcct cctgctatta agattgctag agaattgtgt cttaaacagt tcatgaaccc
1981 agaagaacgc aatttcaatg tatttagtac acacacagta tgtatataaa cacaactcac
2041 agaatatatt ttccatacat tgggtaggta tgcactttgt gtatatataa taatgtattt
2101 tccatgcagt tttaaaatgt agatatatta atatctggat gcattttcaa aaaaaaaa
//