LOCUS DQ854809 1485 bp mRNA linear HUM 25-JUL-2008
DEFINITION Homo sapiens visual system homeobox 1 transcript variant 3 (VSX1)
mRNA, complete cds.
ACCESSION DQ854809
VERSION DQ854809.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1485)
AUTHORS Hosseini,S.M., Herd,S., Vincent,A.L. and Heon,E.
TITLE Genetic analysis of chromosome 20-related posterior polymorphous
corneal dystrophy: genetic heterogeneity and exclusion of three
candidate genes
JOURNAL Mol. Vis. 14, 71-80 (2008)
PUBMED 18253095
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1485)
AUTHORS Hosseini,S.M. and Heon,E.
TITLE VSX1 revisited: the role of VSX1 in chromosome 20 related corneal
dystrophies
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 1485)
AUTHORS Hosseini,S.M. and Heon,E.
TITLE Direct Submission
JOURNAL Submitted (14-JUL-2006) Program in Genetics and Genomic Biology,
The Hospital for Sick Children Research Institute, 101 College
Street, Toronto, Ontario M5G 1L7, Canada
FEATURES Location/Qualifiers
source 1..1485
/db_xref="H-InvDB:HIT000393890"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="III-2-3"
/tissue_type="retina"
/dev_stage="adult"
gene 1..1485
/gene="VSX1"
CDS 36..878
/gene="VSX1"
/codon_start=1
/product="visual system homeobox 1 transcript variant 3"
/protein_id="ABI23975.1"
/translation="MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELP
APAGPGQGSGCEGPAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLL
LADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLG
KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAK
WRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLEGETLGC
REMK"
BASE COUNT 306 a 455 c 438 g 286 t
ORIGIN
1 tccagagagg ctcgcgcctt gcttgctaag gaaccatgac cggccgggac tcgctttccg
61 acgggcgcac tagcagcagg gcgctggtgc ctggcggttc ccctaggggc tcgcgccccc
121 ggggcttcgc catcacggac ctgctgggct tggaggccga gctgccggcg cccgctggcc
181 caggacaggg atctggctgc gagggtccgg cagtcgcgcc gtgcccgggc ccggggcttg
241 acggctccag cctggcgcgt ggggccctac cgctgggact cggcctcctc tgtggcttcg
301 gcacgcagcc gccggcggcc gctcgagcac cctgcctgct cctagcggac gtgccgttcc
361 tgccgcccag gggccccgag cccgctgccc cgctggctcc cagccgtccg ccgcctgcgc
421 tcggccgcca gaagcgcagc gacagcgtct ccacgtccga tgaggacagc cagtctgaag
481 acaggaatga cctaaaggca tcccccacct tgggcaagag gaagaagcgg cggcacagga
541 cagttttcac tgctcaccag ctggaagagt tggagaaggc attcagcgag gcccactacc
601 ctgatgtgta tgcccgagaa atgctggctg tgaaaactga gctccccgaa gaccggatac
661 aggtctggtt tcaaaaccgc agggccaaat ggcgcaagcg ggagaagcgc tggggcggca
721 gcagcgtgat ggccgagtac gggctgtacg gggccatggt gcgccactgc atcccgctgc
781 cagactccgt gctcaactcc gccgagggcg gcctgctggg ctcctgcgcg ccctggctcc
841 tggagggtga gacattgggc tgcagagaaa tgaagtgaac ctgctaagcc gattgtcaaa
901 tggatgagaa actcagagcc aaggatcggg aaaacaccct taaagaacga gtgcaaactt
961 ctgctcctgg aggctcccgt tcactggact ttgcaggaga cacacaggct ccccagaccc
1021 cgtggtggtg cctgatgacc ttcagctgaa ccctgtaatg ctgctaaagt ctgcccctct
1081 ggagaagtgc tcaggtagca ttgttctgcc tcaggaagca tgccgatttt cctgtgtcat
1141 ccttgatgat cactgctacc agacttgccc cctgcagggc accccatgtg caaggaattc
1201 aacaacctag gagttgaaag cattggtctc ccaagttcag tgtgttcttt tccgtatcta
1261 ttaccagctg atgagaataa acctgcagtc atgacagcta ggtcctagtg acaggtgcag
1321 aaagctgctc ttacagaaac tcccctcctt attaagaggc tttgtctatc actcggaact
1381 gcttctactc aagattatct gttgaaaggg aactgtccat accagggcat tgttctgact
1441 tttctggact tcctcaaccc aaaatgcctt gaagaaaaaa aaaaa
//