LOCUS DQ656028 651 bp mRNA linear HTC 13-AUG-2007
DEFINITION Homo sapiens clone Affy08258B04, mRNA sequence.
ACCESSION DQ656028
VERSION DQ656028.2
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 651)
AUTHORS Denoeud,F., Kapranov,P., Ucla,C., Frankish,A., Castelo,R.,
Drenkow,J., Lagarde,J., Alioto,T., Manzano,C., Chrast,J., Dike,S.,
Wyss,C., Henrichsen,C.N., Holroyd,N., Dickson,M.C., Taylor,R.,
Hance,Z., Foissac,S., Myers,R.M., Rogers,J., Hubbard,T., Harrow,J.,
Guigo,R., Gingeras,T.R., Antonarakis,S.E. and Reymond,A.
TITLE Prominent use of distal 5' transcription start sites and discovery
of a large number of additional exons in ENCODE regions
JOURNAL Genome Res. 17 (6), 746-759 (2007)
PUBMED 17567994
REFERENCE 2 (bases 1 to 651)
AUTHORS Guigo,R., Denoeud,F., Reymond,A., Kapranov,P., Rozowsky,J.,
Zheng,D., Castelo,R., Frankish,A., Harrow,J., Ghosh,S.,
Sandelin,A., Hofacker,I.L., Baertsch,R., Keefe,D., Flicek,P.,
Dike,S., Cheng,J., Lagarde,J., Abril,J.F., Shahab,A., Flamm,C.,
Fried,C., Hackermuller,J., Hertel,J., Lindemeyer,M., Missal,K.,
Tanzer,A., Washietl,S., Korbel,J., Emanuelsson,O., Pedersen,J.S.,
Holroyd,N., Taylor,R., Swarbreck,D., Matthews,N., Dickson,M.C.,
Thomas,D.J., Weirauch,M.T., Gilbert,J., Drenkow,J., Bell,I.,
Zhao,X.-D., Srinivasan,K.G., Sung,W.-K., Ooi,H.S., Chiu,K.P.,
Foissac,S., Alioto,T., Choo,S.W., Choo,C.Y., Ucla,C., Manzano,C.,
Wyss,C., Cheung,E., Clarke,T., Brown,J.B., Ganesh,M., Patel,S.,
Tammana,H., Chrast,J., Henrichsen,C.N., Kai,C., Kawai,J.,
Nagalakshmi,U., Wu,J., Lian,Z., Lian,J., Newburger,P., Zhang,X.,
Bickel,P., Mattick,J.S., Carninci,P., Hayashizaki,Y.,
Weissman,S.M., Dermitzakis,E., Margulies,E.H., Hubbard,T.,
Myers,R.M., Rogers,J., Stadler,P.F., Lowe,T.M., Wei,C.-L., Ruan,Y.,
Snyder,M., Birney,E., Gersten,M., Antonarakis,S.E. and
Gingeras,T.R.
CONSRTM ENCODE Consortium
TITLE Long Distance and Global Transcription Networks Characterize ENCODE
Regions
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 651)
AUTHORS Guigo,R., Denoeud,F., Reymond,A., Kapranov,P., Rozowsky,J.,
Zheng,D., Castelo,R., Frankish,A., Harrow,J., Ghosh,S.,
Sandelin,A., Hofacker,I.L., Baertsch,R., Keefe,D., Flicek,P.,
Dike,S., Cheng,J., Lagarde,J., Abril,J.F., Shahab,A., Flamm,C.,
Fried,C., Hackermuller,J., Hertel,J., Lindemeyer,M., Missal,K.,
Tanzer,A., Washietl,S., Korbel,J., Emanuelsson,O., Pedersen,J.S.,
Holroyd,N., Taylor,R., Swarbreck,D., Matthews,N., Dickson,M.C.,
Thomas,D.J., Weirauch,M.T., Gilbert,J., Drenkow,J., Bell,I.,
Zhao,X.-D., Srinivasan,K.G., Sung,W.-K., Ooi,H.S., Chiu,K.P.,
Foissac,S., Alioto,T., Choo,S.W., Choo,C.Y., Ucla,C., Manzano,C.,
Wyss,C., Cheung,E., Clarke,T., Brown,J.B., Ganesh,M., Patel,S.,
Tammana,H., Chrast,J., Henrichsen,C.N., Kai,C., Kawai,J.,
Nagalakshmi,U., Wu,J., Lian,Z., Lian,J., Newburger,P., Zhang,X.,
Bickel,P., Mattick,J.S., Carninci,P., Hayashizaki,Y.,
Weissman,S.M., Dermitzakis,E., Margulies,E.H., Hubbard,T.,
Myers,R.M., Rogers,J., Stadler,P.F., Lowe,T.M., Wei,C.-L., Ruan,Y.,
Snyder,M., Birney,E., Gersten,M., Antonarakis,S.E. and
Gingeras,T.R.
CONSRTM ENCODE Consortium
TITLE Direct Submission
JOURNAL Submitted (18-MAY-2006) National Human Genome Research Institute,
Bethesda, MD 20892, USA
REFERENCE 4 (bases 1 to 651)
AUTHORS Guigo,R., Denoeud,F., Reymond,A., Kapranov,P., Rozowsky,J.,
Zheng,D., Castelo,R., Frankish,A., Harrow,J., Ghosh,S.,
Sandelin,A., Hofacker,I.L., Baertsch,R., Keefe,D., Flicek,P.,
Dike,S., Cheng,J., Lagarde,J., Abril,J.F., Shahab,A., Flamm,C.,
Fried,C., Hackermuller,J., Hertel,J., Lindemeyer,M., Missal,K.,
Tanzer,A., Washietl,S., Korbel,J., Emanuelsson,O., Pedersen,J.S.,
Holroyd,N., Taylor,R., Swarbreck,D., Matthews,N., Dickson,M.C.,
Thomas,D.J., Weirauch,M.T., Gilbert,J., Drenkow,J., Bell,I.,
Zhao,X.-D., Srinivasan,K.G., Sung,W.-K., Ooi,H.S., Chiu,K.P.,
Foissac,S., Alioto,T., Choo,S.W., Choo,C.Y., Ucla,C., Manzano,C.,
Wyss,C., Cheung,E., Clarke,T., Brown,J.B., Ganesh,M., Patel,S.,
Tammana,H., Chrast,J., Henrichsen,C.N., Kai,C., Kawai,J.,
Nagalakshmi,U., Wu,J., Lian,Z., Lian,J., Newburger,P., Zhang,X.,
Bickel,P., Mattick,J.S., Carninci,P., Hayashizaki,Y.,
Weissman,S.M., Dermitzakis,E., Margulies,E.H., Hubbard,T.,
Myers,R.M., Rogers,J., Stadler,P.F., Lowe,T.M., Wei,C.-L., Ruan,Y.,
Snyder,M., Birney,E., Gersten,M., Antonarakis,S.E. and
Gingeras,T.R.
CONSRTM ENCODE Consortium
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2007) National Human Genome Research Institute,
Bethesda, MD 20892, USA
REMARK Sequence update by submitter
COMMENT On Aug 13, 2007 this sequence version replaced DQ656028.1.
FEATURES Location/Qualifiers
source 1..651
/db_xref="H-InvDB:HIT000393141"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="7"
/clone="Affy08258B04"
/note="obtained by 5' RACE"
BASE COUNT 164 a 164 c 114 g 209 t
ORIGIN
1 ggccttttaa ttcgtgattt tgtggcccat tcctttgttc atatctgctc cttctattaa
61 acccggaaga tcagctactg atatctgttt gaaatcactg tacattatct ttccaagttc
121 aggctttaat gttgtaaatg cgtaatctgc aattgcaggt tttgcatgag aaacacaact
181 tagcaaagag gattttccag catttgggaa tctataattt taccattttc atcagttact
241 gaaataccca caggcacagg gatttcccag tcttttcctt tggagccttt cagtgcacta
301 attttgctgt ttgctcctac tccagccaca aaccgtttcc gaggatacct gtctttaagt
361 tgttttaaag tcattctgtt ctgggctaca acccagacat caccaccttt tccaccttct
421 ccacctaaac gaggataacc cattccaccg gatcctcccc tggtgaagag tcttagctta
481 tcgatgaaat ttccatacct catacgcaat ccacctccaa gtcgtgggaa acactcatgt
541 agattttact tgggcaaatt taggagcgcg ggccaatcac aaaggaaact ctcctctttt
601 actaccaaag tggttggtgg gccaatttct ccatctctta aggtccctgg a
//