LOCUS DQ655993 1068 bp mRNA linear HTC 13-AUG-2007
DEFINITION Homo sapiens clone Affy08254F11, mRNA sequence.
ACCESSION DQ655993
VERSION DQ655993.2
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1068)
AUTHORS Denoeud,F., Kapranov,P., Ucla,C., Frankish,A., Castelo,R.,
Drenkow,J., Lagarde,J., Alioto,T., Manzano,C., Chrast,J., Dike,S.,
Wyss,C., Henrichsen,C.N., Holroyd,N., Dickson,M.C., Taylor,R.,
Hance,Z., Foissac,S., Myers,R.M., Rogers,J., Hubbard,T., Harrow,J.,
Guigo,R., Gingeras,T.R., Antonarakis,S.E. and Reymond,A.
TITLE Prominent use of distal 5' transcription start sites and discovery
of a large number of additional exons in ENCODE regions
JOURNAL Genome Res. 17 (6), 746-759 (2007)
PUBMED 17567994
REFERENCE 2 (bases 1 to 1068)
AUTHORS Guigo,R., Denoeud,F., Reymond,A., Kapranov,P., Rozowsky,J.,
Zheng,D., Castelo,R., Frankish,A., Harrow,J., Ghosh,S.,
Sandelin,A., Hofacker,I.L., Baertsch,R., Keefe,D., Flicek,P.,
Dike,S., Cheng,J., Lagarde,J., Abril,J.F., Shahab,A., Flamm,C.,
Fried,C., Hackermuller,J., Hertel,J., Lindemeyer,M., Missal,K.,
Tanzer,A., Washietl,S., Korbel,J., Emanuelsson,O., Pedersen,J.S.,
Holroyd,N., Taylor,R., Swarbreck,D., Matthews,N., Dickson,M.C.,
Thomas,D.J., Weirauch,M.T., Gilbert,J., Drenkow,J., Bell,I.,
Zhao,X.-D., Srinivasan,K.G., Sung,W.-K., Ooi,H.S., Chiu,K.P.,
Foissac,S., Alioto,T., Choo,S.W., Choo,C.Y., Ucla,C., Manzano,C.,
Wyss,C., Cheung,E., Clarke,T., Brown,J.B., Ganesh,M., Patel,S.,
Tammana,H., Chrast,J., Henrichsen,C.N., Kai,C., Kawai,J.,
Nagalakshmi,U., Wu,J., Lian,Z., Lian,J., Newburger,P., Zhang,X.,
Bickel,P., Mattick,J.S., Carninci,P., Hayashizaki,Y.,
Weissman,S.M., Dermitzakis,E., Margulies,E.H., Hubbard,T.,
Myers,R.M., Rogers,J., Stadler,P.F., Lowe,T.M., Wei,C.-L., Ruan,Y.,
Snyder,M., Birney,E., Gersten,M., Antonarakis,S.E. and
Gingeras,T.R.
CONSRTM ENCODE Consortium
TITLE Long Distance and Global Transcription Networks Characterize ENCODE
Regions
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 1068)
AUTHORS Guigo,R., Denoeud,F., Reymond,A., Kapranov,P., Rozowsky,J.,
Zheng,D., Castelo,R., Frankish,A., Harrow,J., Ghosh,S.,
Sandelin,A., Hofacker,I.L., Baertsch,R., Keefe,D., Flicek,P.,
Dike,S., Cheng,J., Lagarde,J., Abril,J.F., Shahab,A., Flamm,C.,
Fried,C., Hackermuller,J., Hertel,J., Lindemeyer,M., Missal,K.,
Tanzer,A., Washietl,S., Korbel,J., Emanuelsson,O., Pedersen,J.S.,
Holroyd,N., Taylor,R., Swarbreck,D., Matthews,N., Dickson,M.C.,
Thomas,D.J., Weirauch,M.T., Gilbert,J., Drenkow,J., Bell,I.,
Zhao,X.-D., Srinivasan,K.G., Sung,W.-K., Ooi,H.S., Chiu,K.P.,
Foissac,S., Alioto,T., Choo,S.W., Choo,C.Y., Ucla,C., Manzano,C.,
Wyss,C., Cheung,E., Clarke,T., Brown,J.B., Ganesh,M., Patel,S.,
Tammana,H., Chrast,J., Henrichsen,C.N., Kai,C., Kawai,J.,
Nagalakshmi,U., Wu,J., Lian,Z., Lian,J., Newburger,P., Zhang,X.,
Bickel,P., Mattick,J.S., Carninci,P., Hayashizaki,Y.,
Weissman,S.M., Dermitzakis,E., Margulies,E.H., Hubbard,T.,
Myers,R.M., Rogers,J., Stadler,P.F., Lowe,T.M., Wei,C.-L., Ruan,Y.,
Snyder,M., Birney,E., Gersten,M., Antonarakis,S.E. and
Gingeras,T.R.
CONSRTM ENCODE Consortium
TITLE Direct Submission
JOURNAL Submitted (18-MAY-2006) National Human Genome Research Institute,
Bethesda, MD 20892, USA
REFERENCE 4 (bases 1 to 1068)
AUTHORS Guigo,R., Denoeud,F., Reymond,A., Kapranov,P., Rozowsky,J.,
Zheng,D., Castelo,R., Frankish,A., Harrow,J., Ghosh,S.,
Sandelin,A., Hofacker,I.L., Baertsch,R., Keefe,D., Flicek,P.,
Dike,S., Cheng,J., Lagarde,J., Abril,J.F., Shahab,A., Flamm,C.,
Fried,C., Hackermuller,J., Hertel,J., Lindemeyer,M., Missal,K.,
Tanzer,A., Washietl,S., Korbel,J., Emanuelsson,O., Pedersen,J.S.,
Holroyd,N., Taylor,R., Swarbreck,D., Matthews,N., Dickson,M.C.,
Thomas,D.J., Weirauch,M.T., Gilbert,J., Drenkow,J., Bell,I.,
Zhao,X.-D., Srinivasan,K.G., Sung,W.-K., Ooi,H.S., Chiu,K.P.,
Foissac,S., Alioto,T., Choo,S.W., Choo,C.Y., Ucla,C., Manzano,C.,
Wyss,C., Cheung,E., Clarke,T., Brown,J.B., Ganesh,M., Patel,S.,
Tammana,H., Chrast,J., Henrichsen,C.N., Kai,C., Kawai,J.,
Nagalakshmi,U., Wu,J., Lian,Z., Lian,J., Newburger,P., Zhang,X.,
Bickel,P., Mattick,J.S., Carninci,P., Hayashizaki,Y.,
Weissman,S.M., Dermitzakis,E., Margulies,E.H., Hubbard,T.,
Myers,R.M., Rogers,J., Stadler,P.F., Lowe,T.M., Wei,C.-L., Ruan,Y.,
Snyder,M., Birney,E., Gersten,M., Antonarakis,S.E. and
Gingeras,T.R.
CONSRTM ENCODE Consortium
TITLE Direct Submission
JOURNAL Submitted (10-AUG-2007) National Human Genome Research Institute,
Bethesda, MD 20892, USA
REMARK Sequence update by submitter
COMMENT On Aug 13, 2007 this sequence version replaced DQ655993.1.
FEATURES Location/Qualifiers
source 1..1068
/db_xref="H-InvDB:HIT000393106"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="7"
/clone="Affy08254F11"
/note="obtained by 5' RACE"
misc_feature 1..1068
/note="similar to CLDN12"
BASE COUNT 298 a 236 c 230 g 303 t
ORIGIN
1 tcaatggtag gtttcattca gagtctactt tagaacctca tgcacaaatg aggaaaagta
61 gggtgtatga tttcctgcat ttatttgaaa aaaacatgat tccagagagg actgtagagt
121 tccaacatat catccccata tctgcagtta ctggagaagg aatcgaagaa ttaaagaatt
181 gtataagaaa gtcactggat gaacaggcca accaggaaaa tgatgcactt cataagaaac
241 agttgcttaa tttgtggatt tctgatacaa tgtcttctac tgagccacca tcaaagcatg
301 ctgttactac ttccaaaatg gatataattt aaatatatta aaaatggtat tgatggaaca
361 gtatttaatg cttaaaaaca aggaaatcct ttcatctgtg acaacctgga ggacatggct
421 cagattattg ctactctgta ttcagatctt catgtgtctc ttctaagctg aataaagctg
481 ttttggaact gtcaggtacc tcaaagctct gactgacagt actccacaag cttgcctgcc
541 atgggctgtc gggatgtcca cgcagccaca gtcctttcct tcctgtgtgg aatcgcctca
601 gtagcagacc tctttgcagg gactctgctt cccaactgga gaaaattacg attgatcaca
661 ttcaacagaa aacgagaaga acctgactgt ttacacaggc ctgtgggtga aatgtgcccg
721 gtatgacgag agcagtgact gcctgatgta cgacactaca tggtactcat cagttgacca
781 gctggacctg cgtgtcctcc agtttgccct gcccctcagc atgctgatcg ccatgggtgc
841 cctgctgctc tgcctgattg gaatgtgcaa cactgccttc aggtcctcgg tgcccaacat
901 caaactggcc aagtgtctgg tcaatagtgc aggttgccac ctggtggctg ggctgctatt
961 tttcctggca ggtactatta ttctagagac atctatctgg gtcatctttt ataacatcca
1021 tctgaacaag aagtttganc cagtcttttc atttttaaaa gcagtgta
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