LOCUS DQ473509 7129 bp RNA linear VRL 24-JAN-2022
DEFINITION Rhinovirus A82, complete genome.
ACCESSION DQ473509
VERSION DQ473509.1
KEYWORDS .
SOURCE rhinovirus A82
ORGANISM rhinovirus A82
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Picornaviridae; Ensavirinae; Enterovirus;
Rhinovirus A.
REFERENCE 1 (bases 1 to 7129)
AUTHORS Kistler,A.L., Webster,D.R., Rouskin,S., Magrini,V., Credle,J.J.,
Schnurr,D.P., Boushey,H.A., Mardis,E.R., Li,H. and DeRisi,J.L.
TITLE Genome-wide diversity and selective pressure in the human
rhinovirus
JOURNAL Virol. J. 4, 40 (2007)
PUBMED 17477878
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 7129)
AUTHORS Kistler,A.L., Webster,D., Reich,S., Magrini,V., Credle,J.,
Schnurr,D., Boushey,H., Mardis,E., Li,H., Ganem,D. and DeRisi,J.
TITLE Direct Submission
JOURNAL Submitted (04-APR-2006) Biochemistry and Biophysics, University of
California, San Francisco, 1700 4th St. Ste. 214, San Francisco, CA
94107, USA
FEATURES Location/Qualifiers
source 1..7129
/organism="rhinovirus A82"
/mol_type="genomic RNA"
/db_xref="taxon:167322"
/country="USA"
/note="clinical isolate"
CDS 621..7088
/codon_start=1
/product="polyprotein"
/protein_id="ABF51203.1"
/translation="MGAQVSRQNVGTHSTQNMVSNGSSLNYFNINYFKDAASSGASKL
EFSQDPSKFTDPVKDVLEKGIPTLQSPTVEACGYSDRIIQITRGDSTITSQDVANAVV
GYGIWPHYLSPEDATAIDKPTRPDTSSNRFYTLESKIWTRDSKGWWWKLPDALKEMGV
FGQNMYYHFLGRSGYTIHVQCNASKFHQGTLIVAAIPEHQLASAEKGNVNTGYNYTHP
GERGRDVGQERESTSYQPSDDNWLNFDGTLLGNITIFPHQFINLRSNNSATLILPYVN
AVPMDSMLRHNNWSLVIIPICPLETNGGDVTVPITISISPMFAEFSGARARSQGLPVL
MTPGSGQFMTTDDYQSPSALPWFHSTKEIFIPGQVHNLAELCQVDTIIPINYTTANTT
SVNMYTVVLQKENPGTEVFAMRVDIATQPLATTLIGEIASYYTHWTGSLRFSLMFCGT
AGTTLKLLVAYTPPGIAKPENRKDAMLGTHVVWDVGLQSTISMIVPWVSASHFRNTTP
DKFSQAGYITCWYQTTLVTPPSTPATARMLCFVSGCKDFCLRMARDTNLHKQVGPITQ
NPVEKYVDSVLNEVLVVPNINESHPSTSNSAPALDAAETGHTSTVQPEDMIETRYVQT
SQTRDEMSLESFLGRSGCIHISHLNVKYTDYNEKNNFRSWPISIKEMAQIRRKFELFT
YVRFDSEITLVPCIASQSNDIGHVVMQYMYVPPGAPKPEKRDDYTWQSGTNASIFWQH
GQPYPRFSLPFLSIASAYYMFYDGYDGDVPGSRYGTIVTNDMGTLCSRIVTEEHQTQV
NITTRIYHKAKHVKAWCPRPPRAVGYTHTHVTNYKPSEGDYSVSIPIRDSPRHILNVG
PSDMYVHVGNLIYRNLHLFNSDVHDSILVSYSSDLVIYRTNTTGDDYIPTCDCTDATY
YCRHKNRYYPIKVTSHDWYEIQESEYYPKHIQYNLLIGEGPCEPGDCGGKLLCKHGVI
GIITAGGEGHVAFIDLRHFHCAEEQGITDYIHMLGEAFGSGFVDSVKDQINAINPINN
ISKKLVKWILRIISAMVIIIRNSSDPQTVIATLTLIGCSGSPWRFLKEKFCKWTQLHY
VHKESDSWLKKFTEMCNAARGLEWIGNKISKFIEWMKSMLPQAQLKVKYLNELKKLSL
LEKQIENLRCADAKTQEKIKVEVDTLHDLSCKFLPLYASEAKRIKVLYNKCNNIIKQK
KRSEPVAVMIHGPPGTGKSITTSFLARMITNESDIYSLPPDPKYFDGYDQQSVVIMDD
IMQNPDGEDMSLFCQMVSSVTFIPPMADLPDKGKPFDSRFVFCSTNQSLLAPPTITSL
SAMNRRFYLDLDIIVHENYKNAQGKLDVSRSFKPCDVDTKIGNAKCCPFICGKAVSFK
DRNTCEVYSLCQIYNMIMQEDRHRRSVVDVMTAIFQGPITMNAPPPPAIADLLQSVRT
PEVIKYCEENKWIIPADCKIERDLNLANNIITIIANVISIAGIIFVIYKLFCTLQGPY
SGEPKPKPKIPERRVVAQGPEEEFGRSLIKHNTCVVTTENGKFTGLGIYDKTMIIPTH
ADPGKTIQIDGINVKISDSYDLYNKNGVKLEITVVKLDRNEKFRDIRKYIPEKEDDYP
ECNLALVANQPEPTILNVGDVVSYGNILLSGNQTARMLKYNYPTKSGYCGGVLYKIGN
VLGIHVGGNGKDGFSATLLRSYFSETQGQITKTANVKEHGFPTIHTPSKTKLQPSVFY
DVFKGTKEPAVLSEKDPRLETDFKKALFSKYKGNLNCEINDHVKIAVAHYSAQLMTLD
IDSNNMSLEDSVFGSDGLEALDLNTSAGFPYISMGIKKRDLIDKNTKDISKLKIALDK
YGVDLPMVTFLKDELRKKEKISSGKTRVIEASSVNDTVAFRMVYGNLFAAFHKNPGIV
TGSAVGCDPETFWSKIPVMLDGECIMAFDYTNYDGSIHPMWFEALKMVLSNLQFEPRL
IDRLCNSKHIYKDSYYEVEGGVPSGCSGTSIFNTMINNVIIRTLVLDAYKHIDLDKLK
IIAYGDDVIFSYKYTLDMEAIAQEGSKYGLTITPADKSETFKKLDYSNVTFLKRGFKQ
DERYPFLIHPTFPIDEIHESIRWTKKPSQMHEHILSLCHLMWHNGHEVYRDFERKIRS
VSAGRALYIPPYEVLLHEWYEKF"
mat_peptide 621..827
/product="1A (VP4)"
mat_peptide 828..1607
/product="1B (VP2)"
mat_peptide 1608..2318
/product="1C (VP3)"
mat_peptide 2319..3185
/product="1D (VP1)"
mat_peptide 3186..3611
/product="2A (P2-A)"
mat_peptide 3612..3896
/product="2B (P2-B)"
mat_peptide 3897..4862
/product="2C (P2-C)"
mat_peptide 4863..5093
/product="3A (P3-A)"
mat_peptide 5094..5156
/product="3B (VPg)"
mat_peptide 5157..5705
/product="3C (P3-C)"
mat_peptide 5706..7085
/product="3D (polymerase)"
BASE COUNT 2357 a 1320 c 1457 g 1995 t
ORIGIN
1 ttaaaactgg gagtgagttg tccccactca ctctacccac gcggtgttgt acactgttat
61 tacggtaact ttgtatgcca gtttttgttc ccctatcccc ctttaaagta acttagaagc
121 atgaacttac agaccaaaag gtgatgatca cccagatcat taaaggtcaa gcacttctgt
181 ttccccggtc aatgttgata tgcttcaaca aggcaaaaac aacagcgatc gttatccgca
241 agatgcctac acaaagctta gtacctcctt tgatggtatt tgtctggtcg ctcaggtgtt
301 tccccaacac tagacctggc agatgaggct agaaactccc cactggcgac agtgttctag
361 cctgcgtggc tgcctgcaca ccctttcggg tgtgaagcca aatactggac aaggtgcgaa
421 gagccccgtg tgctcatctt gagtcctccg gcccctgaat gcggctaacc ttaaacccgc
481 agccattact cacaatccag tgagcagatg gtcgtaatga gcaattgtgg gatgggaccg
541 actactttgg gtgtccgtgt ttcatgtttt actttatgac ttgcttatgg tgacaatata
601 tagagatata tattggcatc atgggcgctc aagtatctag acagaatgtt ggtacacatt
661 caactcaaaa catggtttca aatggatcta gtttgaatta tttcaacatt aattacttta
721 aggatgctgc ttctagtgga gcatctaaat tggaattttc acaagatccc agtaaattta
781 cagacccagt caaggatgtt ttagaaaagg gaatcccaac tttgcagtcg ccaacagttg
841 aagcctgtgg atactcggat agaattattc aaataacaag aggagattcc acaattacat
901 cacaggatgt agcaaatgct gttgtggggt acgggatatg gccacactac ttatcccctg
961 aagatgctac agctatagat aaaccaacac gccctgatac gtcatctaat aggttctaca
1021 ctttagaaag taaaatttgg acaagagact cgaaaggttg gtggtggaaa ttgccagatg
1081 cactcaagga aatgggagtt tttggacaga acatgtatta ccatttccta gggagaagtg
1141 gctatacaat ccatgtacaa tgtaatgcta gcaaattcca ccagggcaca ttgatagtgg
1201 ctgctatacc agaacatcaa ttggcaagtg cagagaaagg aaatgttaat actggctata
1261 attacacaca ccctggtgaa aggggtaggg atgttgggca ggagagagaa agtaccagct
1321 atcagcccag tgatgataat tggcttaatt ttgatggcac tctattgggt aatataacca
1381 ttttcccaca tcaatttata aacttgagaa gcaacaattc tgcaacactt attctcccat
1441 atgtaaatgc tgtacctatg gactctatgc ttagacacaa taattggagt ttggtaataa
1501 tcccaatttg tcctctagaa actaatggtg gtgatgtcac tgtacctata acaatatcta
1561 ttagtccaat gtttgctgaa ttctctggag cgcgagcccg tagccaggga ttgccagtat
1621 taatgacccc aggatctggt cagttcatga caactgatga ttaccagtcg cccagtgcat
1681 taccatggtt ccattcaaca aaggaaatat ttatcccagg tcaagtacat aatttggcag
1741 aactgtgtca ggttgataca attataccaa ttaattatac aacagcaaat acaactagtg
1801 ttaatatgta cactgtggtg ctgcaaaaag aaaaccctgg aacagaagtt tttgctatga
1861 gagttgacat agcaacacaa cctctagcta caacattaat tggagagatt gccagttatt
1921 atacacattg gactggtagt ttgagattta gcctcatgtt ttgcggaacg gcaggcacca
1981 cacttaaatt actagttgcc tacacacctc ctggaattgc caagccagaa aacaggaaag
2041 acgcaatgct tggtacccat gttgtttggg atgttggcct acaatcaacc atatcaatga
2101 ttgtgccttg ggtcagtgct agtcatttta gaaacaccac accagataaa ttctcacaag
2161 caggatacat aacatgttgg taccaaacca ctcttgtcac accccctagc acgcctgcca
2221 cagccagaat gctctgtttt gtatcagggt gtaaggattt ctgcctacgc atggctagag
2281 acactaactt acataaacaa gttggaccca tcacacaaaa tccagttgaa aaatatgttg
2341 acagtgttct gaatgaggtg ttagttgttc ccaatattaa tgaaagtcac cctagtactt
2401 caaattcagc tcctgcactg gatgctgcag agacggggca cacaagtact gtacaacctg
2461 aagacatgat tgaaacacgg tatgtccaaa catcacaaac tagggatgag atgagtcttg
2521 agagtttctt agggaggtct ggctgtatac atatatcaca tctaaatgtt aagtatacag
2581 attacaatga aaagaataac tttagatcat ggccaataag tataaaggag atggcacaaa
2641 taagaagaaa gtttgaactt ttcacgtatg tgagatttga ttcagaaatt accctagtgc
2701 cttgtatagc ctctcaaagt aatgacattg ggcatgtagt gatgcaatac atgtatgtcc
2761 cacctggtgc acccaaacca gaaaagagag atgattacac ttggcaatct ggaactaatg
2821 cttcaatttt ctggcaacac ggtcaacctt accctcgctt ttcacttcct ttcttaagca
2881 tagcctcagc ttattacatg ttttatgatg gttatgatgg tgatgttccc gggtcaagat
2941 atgggaccat agtaacaaat gatatgggca cactgtgttc tagaattgta actgaagaac
3001 accaaactca agtcaatatc accacaagga tatatcataa agccaaacat gtgaaagcgt
3061 ggtgcccacg acccccaaga gctgtgggtt acacacacac acatgttacc aactacaaac
3121 catcagaagg agactacagt gtcagtattc caattagaga tagccctaga catattctca
3181 atgtgggacc tagtgacatg tatgtacatg tcggcaattt aatatacaga aatttacatc
3241 tttttaattc tgatgtccat gattctatct tagtctctta ttcatctgat ctagtcattt
3301 accgcacaaa cactacaggt gatgactata tcccaacatg tgattgcaca gatgcaactt
3361 attactgtag gcataagaat agatattacc caataaaagt tactagccat gattggtatg
3421 aaatacaaga aagtgagtat tatcccaaac acatccaata taatctctta attggtgaag
3481 gcccatgtga accaggggat tgtggtggaa aactcctttg caagcatggt gtgattggaa
3541 ttattacagc aggtggtgag ggacatgtgg ctttcataga tttgagacat ttccattgtg
3601 cagaagaaca aggtatcaca gactacatac atatgctagg ggaagccttt ggaagtggat
3661 ttgtggacag tgttaaggat caaatcaatg caataaaccc cataaataat attagcaaga
3721 aactagttaa atggatcctt aggataatat ctgctatggt gataatcata aggaatagct
3781 cagatccgca aacagttata gctacactta cactaatagg ttgttcagga tcaccatggc
3841 ggtttctaaa ggaaaagttc tgtaaatgga cacagctgca ttatgtacac aaagagtcag
3901 actcatggct taagaaattc acagaaatgt gcaatgcagc aagaggtctt gagtggattg
3961 gaaataaaat atccaaattc atagaatgga tgaagtctat gttgccccag gcccaattaa
4021 aggtcaagta tctcaatgaa cttaaaaagc tgagtttgct ggagaagcag attgagaact
4081 tgcgctgtgc agatgcaaaa acccaggaga aaataaaagt agaagttgat accctccatg
4141 atttatcatg caagttcctt cctttgtatg ctagtgaagc taagagaatc aaagttttgt
4201 acaataaatg caataatata atcaagcaga aaaagaggag tgaaccagtt gctgtgatga
4261 tacatggtcc acctggaact ggtaagtcta taactacaag ctttcttgct aggatgataa
4321 caaatgaaag tgacatttat tcattaccac cagatcccaa atactttgat ggatatgacc
4381 aacagagtgt agttatcatg gatgatataa tgcagaatcc agatggagag gacatgtccc
4441 tgttttgtca gatggtgtca agtgtcacgt ttattccacc aatggccgat ttgccagata
4501 agggtaaacc atttgattct cgttttgtct tctgtagcac aaaccaatcc cttttagctc
4561 caccaactat tacttcactt tctgctatga atagaagatt ttatttagat ttggatataa
4621 ttgtgcatga aaattacaaa aacgcccaag ggaaattgga cgtgtccaga tcttttaaac
4681 catgtgatgt ggatactaaa ataggcaatg caaaatgctg cccattcata tgtggtaagg
4741 ctgtgtcttt taaagaccga aacacatgtg aggtatattc tctctgccag atttacaaca
4801 tgattatgca ggaggatagg caccgtagga gtgttgtgga tgtgatgaca gcaatatttc
4861 aaggacctat cacaatgaat gccccaccac cacctgcgat agcagattta ctacaatcag
4921 tcagaactcc agaggtaatt aagtattgtg aagagaacaa gtggataatt ccagcagatt
4981 gtaaaattga gagggattta aatttagcaa acaatattat aacaatcata gcaaatgtta
5041 ttagtatagc tggtattatt tttgttattt acaagttatt ttgtacactc cagggcccat
5101 actctgggga gcctaaaccc aaacccaaaa ttccagaaag aagagttgtg gctcaaggac
5161 ctgaagagga atttggtcgc tccctaatta aacataatac atgtgttgtt accacggaga
5221 atggaaaatt cacaggctta ggtatatatg acaaaaccat gattatacca acacatgctg
5281 atccaggtaa gacaatccaa atagatggga taaatgttaa aatttcagac tcttatgatc
5341 tatataataa gaatggtgtg aagcttgaga taacagtggt taaattagat aggaatgaaa
5401 aatttaggga tattcgaaaa tacatcccag agaaggaaga tgattatcca gaatgtaatt
5461 tggccttagt agctaaccag cctgagccta caatactaaa tgtaggtgat gttgtatcat
5521 atggaaatat attacttagt ggaaatcaaa ctgcaagaat gcttaaatac aattatccaa
5581 ctaaatcagg atattgtggg ggggttctgt ataaaatagg taatgttctg ggtatacatg
5641 ttggaggtaa tggtaaggat ggattctcag ctacattact cagatcttac tttagtgaga
5701 ctcaaggaca gataacaaaa actgcaaatg ttaaggaaca tggattccct actatacaca
5761 cccctagcaa aaccaaatta caacccagtg tattttatga tgtattcaaa gggaccaaag
5821 aaccagctgt actatctgag aaagatccac gcttagaaac agatttcaag aaagccttat
5881 tttccaaata caaggggaat ctaaactgtg aaataaatga ccatgttaag attgcagttg
5941 cacactattc tgcccaacta atgacacttg atatagattc aaacaatatg agtttagaag
6001 atagtgtgtt tggctcagat ggactagagg ctttggattt gaatactagt gcaggttttc
6061 catacataag catgggaata aagaaaagag acctaatcga caaaaacacc aaagacatat
6121 ctaaacttaa aattgcatta gataaatatg gagtggattt acccatggtc actttcctta
6181 aagatgagct tagaaagaaa gagaagatat catctggaaa aactcgtgtc atagaggcta
6241 gcagtgtgaa tgatacagta gcatttagaa tggtatatgg taatttattt gcagcttttc
6301 ataaaaaccc tgggatagta acaggctctg cagttggatg tgatccggaa acattctggt
6361 caaagatccc tgtcatgtta gatggtgaat gcataatggc ttttgattat acaaactacg
6421 atggtagtat acacccaatg tggtttgaag ctttgaaaat ggtattaagt aacttgcaat
6481 ttgaacccag gttaattgat agattgtgta attctaagca tatatacaaa gattcatact
6541 atgaggttga ggggggggtg ccttcaggat gttctggaac aagcatattt aatactatga
6601 tcaataatgt aattataaga acattagtgt tagatgcata caaacatata gatttggata
6661 aattgaaaat aatagcatat ggtgatgatg tgattttctc atacaaatac actcttgata
6721 tggaagcgat tgctcaagag ggcagcaaat atggactaac catcacacct gctgacaaat
6781 ctgagacttt taagaagctt gattatagta atgttacctt tctgaaaaga ggcttcaaac
6841 aagatgaaag atacccattt ttaatccatc caacctttcc aattgatgag atacatgagt
6901 caattagatg gacaaagaaa ccctcacaaa tgcatgagca cattctctca ttgtgtcatt
6961 taatgtggca caatggtcat gaagtctata gagactttga gcggaagata cgcagtgtta
7021 gcgctggacg tgcactgtat atccctccct atgaagtgct cttgcatgag tggtatgaaa
7081 aattttaata gaatatagaa atgataaaca tttagtttat tagttttat
//