LOCUS DQ011664 2540 bp DNA circular BCT 06-APR-2020
DEFINITION Bifidobacterium catenulatum plasmid pBC1, complete sequence.
ACCESSION DQ011664
VERSION DQ011664.1
DBLINK BioSample: SAMN14224462
KEYWORDS .
SOURCE Bifidobacterium catenulatum
ORGANISM Bifidobacterium catenulatum
Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae;
Bifidobacterium.
REFERENCE 1 (bases 1 to 2540)
AUTHORS Alvarez-Martin,P. and Mayo,B.
TITLE Sequence and analysis of plasmid pBC1 from Bifidobacterium
catenulatum L48
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2540)
AUTHORS Alvarez-Martin,P. and Mayo,B.
TITLE Direct Submission
JOURNAL Submitted (19-APR-2005) IPLA-CSIC, Carretera de Infiesto s/n,
Villaviciosa, Asturias 33300, Spain
FEATURES Location/Qualifiers
source 1..2540
/organism="Bifidobacterium catenulatum"
/mol_type="genomic DNA"
/strain="L48"
/db_xref="taxon:1686"
/plasmid="pBC1"
repeat_region 141..159
/note="IR1"
/rpt_type=inverted
repeat_region 161..179
/note="IR2"
/rpt_type=inverted
repeat_region 231..254
/note="IR3"
/rpt_type=inverted
repeat_region 265..284
/note="IR4"
/rpt_type=inverted
repeat_region 309..332
/rpt_type=direct
repeat_region 333..356
/rpt_type=direct
repeat_region 357..380
/rpt_type=direct
repeat_region 381..394
/rpt_type=direct
repeat_region 536..554
/note="IR5"
/rpt_type=inverted
gene 574..1521
/gene="repB"
CDS 574..1521
/gene="repB"
/note="replicase; essential replication protein"
/codon_start=1
/transl_table=11
/product="RepB"
/protein_id="AAY33771.1"
/translation="MSDEYSQPTLELSRTFEGWWLPRRPLCCDDDYSQLVRRSRTDAL
RCKHIEANPSALVNTIVVDIDDANAKAMALWGHRGMLPNWIAENPANGHAHAGWVLTY
PVPRTDMARLKPLKLLHAVTEGLRRSVDGDEGYSGLLMKNPLSDAWDSDLCREDTYDL
PDLVAALEEHGDMPPKSWTRTKRAREVGVGRNCTLFDEARTLAYRQVRRLPDRTPASS
DLLREYVRRTCHEINASFPDPLPVREVNDTAKSIHKWITTRSRMWRDGAVANAATFVA
IQSARGRKGGRGNKRDKQGNVQNAFKQKAELFGKEMMGQ"
CDS 1518..1808
/codon_start=1
/transl_table=11
/product="OrfX"
/protein_id="AAY33772.1"
/translation="MTIQTIRKKRPLPAKELAAMYDVSVRTIQRWASQTRKDWIDEQA
TLRESIRAYHDDEGHTWPQTAEHFGMSQDAVRSRCYRARKERAAEAKAARPE"
repeat_region 1736..1761
/note="IR6"
/rpt_type=inverted
repeat_region 1817..1835
/note="IR7"
/rpt_type=inverted
repeat_region 1838..1856
/note="IR8"
/rpt_type=inverted
repeat_region 1917..1936
/note="IR9"
/rpt_type=inverted
repeat_region 1941..1981
/note="IR10"
/rpt_type=inverted
gene complement(2000..2284)
/gene="copG"
CDS complement(2000..2284)
/gene="copG"
/note="contains conserved motif found in CopG proteins"
/codon_start=1
/transl_table=11
/product="CopG-like"
/protein_id="AAY33773.1"
/translation="MSDFSERDRELLAMFGMGEDQVRDDVERMESETAGHGITGPVHY
ALHMLPEHGEEMVSMTVKLPKSQLEKVTETARRYHISRSEYVRRQLAGAV"
BASE COUNT 473 a 826 c 791 g 450 t
ORIGIN
1 agatctccaa acagcacctc caagcaaagt tgataccaga gtaacaccac ggtcacacaa
61 gtggaacacc gttgtggcac aagccgcgcg agcggtctgg aggctccgcc gaccatgggg
121 tacgggtctt cccggcaagc cgattcgcac cgcgaatcga gtgattgtag ctacaatcac
181 gtcgcttgct actccggcct tgcggctttt tcctcggcct cgggttgttg ctcctgcgcc
241 gaagggcgca ggaggtgctg cgttcggttc atgtacatga accgtctagc ttgcttacct
301 tcgatttgat ggacatctcc atgtggatgt ccatggacat atccatgtgg gtgtccatag
361 acgtgtccat gtgggtatcc atggatatat ccatctgagc gcataggaag cgcatgaggg
421 tggatgatcg ttcggtttgg ggtgtttttg gccagatttc gacagttttg ggtaactctg
481 ggaaggagca gcccatgctt tgctgggctg aaatatctga cttggtttta ggcgaacttg
541 accagtggtc aagtacgacg tacactagtg cccatgtctg acgagtattc gcagccgacg
601 cttgagctgt cgcgcacgtt cgagggctgg tggctgcccc ggcgtccgct gtgctgcgac
661 gacgactaca gccagctggt gcgccggagc cgcaccgacg cgctcagatg caagcacatc
721 gaggcgaatc cctcggcgct ggtgaacacg atcgtggtgg acatcgacga cgcgaacgcc
781 aaggcgatgg ccctgtgggg gcaccgtggg atgctgccga actggatcgc ggagaacccg
841 gccaacgggc acgctcacgc gggctgggtg ctgacctacc ccgtgccccg caccgacatg
901 gcccggctca aaccgctgaa gctcctgcac gccgtcaccg aggggctgcg ccgcagcgtg
961 gacggcgacg agggctattc cggcctgctg atgaagaacc cgctgagcga cgcgtgggac
1021 agcgacctgt gccgcgagga cacctacgac ctgcccgacc tcgtggccgc gctcgaagag
1081 cacggggaca tgccgcccaa gagctggacg cgcaccaaac gcgcccgcga ggtcggcgtg
1141 ggccgcaact gcaccttgtt cgacgaggcc cgcaccctcg cctaccgtca ggtgcgccga
1201 ctgcccgacc gcacgcccgc ctcctccgac ctgctgcgcg agtacgtgcg ccgcacctgc
1261 cacgaaatca acgcctcgtt ccccgacccg ctgcccgtgc gcgaggtcaa cgacaccgcc
1321 aagagcatcc acaagtggat caccacgcga agccgcatgt ggagggacgg tgccgtcgcc
1381 aacgccgcca cgttcgtcgc catccaatcc gcgcgcggac gcaaaggcgg tcgcggaaac
1441 aaacgcgaca agcaagggaa cgttcaaaat gccttcaagc aaaaggcaga gctgttcggc
1501 aaggagatga tggggcaatg acgattcaga cgattcgcaa gaagcgtccg cttcccgcca
1561 aggagctggc ggcaatgtac gacgtctccg tgcgcactat tcagcgatgg gcttcacaaa
1621 cccgtaagga ctggatagac gaacaggcaa cgttgcgcga atccatccgt gcctaccacg
1681 atgacgaggg ccatacgtgg ccgcagaccg ccgagcactt cggcatgagc caagacgcgg
1741 tgcgtagccg ctgctaccgc gcgcgcaagg agcgtgcggc cgaggcaaaa gccgcaaggc
1801 cggagtagca agtgacgtga acgtatatac gttcactcga ttcgcaccgc gaatcggctt
1861 gccgggaaga cccgtacccc atggtcggct gcgcctccag accgctcgcg cggcatggtg
1921 acaccgcggt gtcacctatg ggaacacccg tgtgccacga atgatggcac acgggtgttc
1981 cgtcttcgcg cggcggcggt cagacggctc cggcgagctg ccggcgcacg tactcgctgc
2041 ggctgatgtg gtagcgcctg gcggtctccg tgaccttctc cagctgactc ttgggcagct
2101 tgacggtcat gctgaccatc tcctcgccgt gctcggggag catgtgcagc gcgtagtgga
2161 cgggtccggt tatgccgtgg cccgcggtct cggactccat gcgctccacg tcgtccctga
2221 cctgatcctc gcccatgccg aacatcgcca acagctccct gtcgcgttcg ctgaaatcgc
2281 tcatcggtcg ctccttcccc cgcgcaggcg ggctatctcg cttcgggtct tcttcgtcgg
2341 cggcgtcatg gcgtggtaga tgagcgcgcg gtcgccgcgc tgctcgtaga ccatctccac
2401 gtccctgccg cgcccgtcga ggccgatgca gacccacgtg ccgttgtccc tgcgggcgtc
2461 caccatgacg ctcctgaacg ccgcaagcac gtcctccacg gacagctcgg gatgccgctc
2521 atgcacgcgc ggcagcacgt
//