LOCUS BR000314 5000 bp DNA linear PLN 19-FEB-2008 DEFINITION TPA_inf: Oryza sativa Japonica Group OsRR5 gene for A-type response regulator, complete cds. ACCESSION BR000314 VERSION BR000314.1 KEYWORDS Third Party Data; TPA; TPA:inferential. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 5000) AUTHORS Ito,Y. and Kurata,N. TITLE Direct Submission JOURNAL Submitted (23-MAY-2006) to the DDBJ/EMBL/GenBank databases. Contact:Yukihiro Ito National Institute of Genetics, Plant Genetics Laboratory; Yata 1111, Mishima, Shizuoka-ken 411-8540, Japan REFERENCE 2 AUTHORS Ito,Y. and Kurata,N. TITLE Identification and characterization of cytokinin-signalling gene families in rice JOURNAL Gene 382, 57-65 (2006) COMMENT PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-5000 AL663010.4 85001-90000 2844-3039 AK106426.1 1-196 3117-3163 AK106426.1 197-243 3266-3343 AK106426.1 244-321 3455-3525 AK106426.1 322-392 3615-4063 AK106426.1 393-839 FEATURES Location/Qualifiers source 1..5000 /chromosome="4" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" CDS join(2919..3039,3117..3163,3266..3343,3455..3525, 3615..3702) /codon_start=1 /gene="OsRR5" /product="A-type response regulator" /protein_id="FAA00266.1" /transl_table=1 /translation="MATCRSRGVERGGAPHVLAVDDSSVDRAVISGILRSSQFRVTAV DSGKRALELLGSEPNVSMIITDYWMPEMTGYELLKKVKESSRLKEIPVVIMSSENVST RINRCLEEGAEDFLLKPVQPSDVSRLCSRVLR" BASE COUNT 1257 a 1176 c 1214 g 1353 t ORIGIN 1 tcaagatacg gtgccagtgt accgcagata ggattttttt ttatcttcta ctagtattat 61 atgtttaggc ttaggtgaga aatatttact tcgaacatgt ctgattttgt agcatcaagt 121 actgtgtttc tgtccttgat gctctatcca tttctgtctt tccaagagtt attaacatcc 181 aactatcgga gattcgctac ataatctcag tttggaagta aatatactag cgtatcacta 241 gtggcgagcg tatcactatc tttcacggtt taactatacg taatctctca gtttggaagt 301 aaatagtgac atgaactcgg ctcttcaatt tatacgcatg ctcatgatta tggcaggaag 361 ttgtctctgg cctgtcgcta gctcgtgatg agatacggcg tatccgcgag atacaccgta 421 taatcaagtg aaagcgcagt acctcaatta actgacgcac agcaccgcaa aatcgctcag 481 atacgtacag tactccagaa tgcatgtacg tacaccccga catgcatgta cgtactggcg 541 tactgcagaa tggatgtcaa tctgtcatcc acagccaatc tacctcctga ctgcctcgaa 601 ggtgacgaaa gaatctctga agcaacttga taagcagaga catcgttttc tctgggctgg 661 cacaggcgat atcactgggg gaaaatgcaa ggtcaattgg acaaagacat gcttgccgac 721 tagccaggga ggcttgggag tcctgaacct agaaaaattc acaagggcct tgagactgcg 781 atggctttgg cacgaatgga aagatccgaa caagccgtgg gtgggtttgg acacgccttg 841 tgatgaaatc gacaaagacc tcttcgctgc ctcaacaaag ataaccgtcg gtgatgggaa 901 tatgacacgc ttctgggatt ccacttggat tgatgggcgc aggccaaaag atcttatgcc 961 gttggtctac gcgatctcca aaaataggaa aaagtcccta caccaaggga aagaggacga 1021 cacatgggtg gatgacctga tctttgacgc aggctcaacc atcacagtca acctagtgga 1081 acagctggtc cgcttgtggg aagcggtccg gaatgtgcag ttagtcagtg aagagccaga 1141 tcagattgtt tggaaattca caggcaatgg ccattataca gcctcttcgg cctatcatgc 1201 acagtgcttg gaggcgccaa gtacaaacct caactctttg atttggaaag catgggcccc 1261 ggggaaatgc aaattctatg tctggctcat catccagaat agagtctgga cgtccgaccg 1321 acttgcaata agaggttggc agaacaacgg ccattgccct ctctgtcgtt gcgaagctga 1381 gacgggattg catcttgtcg ccacatgcag atacacaaag agaatctggc accacgttgc 1441 cggatgggtg ggatatcatc aattggagcc gtcccagtgg gaggaagccc agtcagtctg 1501 ccaatggtgg gaaagcctag caaatactcc caacatccca aaaaagggtc ttcggtccct 1561 catcctacta gtagtctggg aaatctggaa ggagagaaat cggcggattt tcgataacaa 1621 agagatggcg gtaggccttc tcctagcaaa aataaaagag gaggctagcg tgtgggcctt 1681 agcaggggca aaaagattgc gcgatttcgt cccacgcatt gtatagttta taacttaaag 1741 tcttttttac tttaccctta agggttatat tttcttcttc tatattcaat gaaaaggcgc 1801 actcttatcc cgttttccgt tcaaaaaaaa aatctgtcat ccacatattc acctcctcag 1861 ccgactactc catgtacata cgtacggaca tacggtgtat ttataggctt ccaataaatg 1921 agcaaacctg ctactgctag tactcagtgc tacgacactg ctactacaac cttcatacga 1981 ggcgatatac tgtatgtaca caactgttac agagtacaga gggaccgatg atcagtaatt 2041 gtaaagcaga tccagtacgg cactgtatac agtactcgtg tatacagtat acagtagtat 2101 cagacagtag ttctgcaaga gaaaaataaa gcgtacagta tctatacacg ggtatcgtaa 2161 tgaaactatc attataaaca ttaatacgga gtacgtgtat ggtaatagaa gcatgggacc 2221 tatacaccag ttgattataa tgacagtgat attatggtgg atgatcctca ccccgtatac 2281 acaggatgct ttgatgcaga tggagctcat ttaagagaga tgatacggtg gcgccggtga 2341 ccgagccagc cagcccggcc gtccgtgcca ggcaggcatg caggatgcgc gaggcgagtt 2401 aaatacgagc accactgttg gaagcgacaa aagatacggt ccgctgctgg ctgcctggtc 2461 gctcacgcgc gcacgccccc gagccgtagc cctcattggt acgtggcctc gtggatccac 2521 tgcactttgt tgcacggttc gcaccccacc ccggcgcgcg cggcgatgcg tcacgctttg 2581 cttattggga gcgcgcgggg tcggggatac gggccgtatc agatccgcgc cgcggccgta 2641 tcgatatctc ttggattcac tagcgtagct agctagctag ctctcgccca acctgcctcc 2701 ctggcggccg cgatatcgat cactctcggt gggcgcgccg ggcgatcgat cccctcgtct 2761 ccgctccttg acgtcgtctt ctctccccat ctcgcacgca cgggcgcctc tatataaggc 2821 gcaccacacg tccagtacct tccacggtca cacacagaat tcctaaagcc gacttggctt 2881 ttgctcgcga gtaggactgt aggagagata tcgatctgat ggccacctgc aggagccgtg 2941 gcgtcgagag gggcggcgcg ccgcacgtcc tcgcggtgga cgacagctcc gtggaccgcg 3001 ccgtcatctc cggcatcctc cggagctctc agttccgcgg tgagctgctg gctctcttgc 3061 tcctgtacca catattgtcc atcctcgttc ttcttcttac gtgtgcatgt gtgtagtgac 3121 ggctgtggac agcgggaaga gggcattgga gctgctaggc tcggtgagtc tccggcatcc 3181 tctgcctttt tgctgttggt tacgcaaatg tggaggtgtg ttttgcctgc gaggccgtaa 3241 acgttttttt ttctttggct cgcaggaacc gaatgtgagc atgattatca ctgactactg 3301 gatgccggag atgaccgggt atgaactcct gaagaaggtc aaggtaatcc ggtgatatca 3361 ccaccgttat ttgggccaac ttccatagta ctcctcgtgc atattactac tcaccttttc 3421 tgatttgaca atagaaaatg gcatatcttt gcaggagtcg tccaggctga aggagatccc 3481 tgtggtgatc atgtcctcgg agaacgtctc tacaaggatc aacaggtttg tgtgcacagt 3541 atcggtgccc atatctgccc aaatactatc aagatatact catcttcttg acacgttttt 3601 ggttaatttg ccaggtgctt ggaggaagga gcggaggatt tcttgctgaa gcccgtgcag 3661 ccgtcggacg tgtcgcggct gtgcagccgc gtcctccggt gagccgtgca ggcggcggcc 3721 ggtcgggtgg gcgtcgtggg cgactgaagc gtccctgcat gcatatgcgg cttcagtgtt 3781 ttgggggttg gaattaatag cagcagaagc agaagcagta gtagtagtga ttagtggtag 3841 ccaaacgcac tgtgcgcttg cagatgttgt ggttaatggg ctgaatttgc ctctcccttt 3901 ctctattttt ctcattccga atgtcatgtt ctagctgttc cctgtgtcga tctagaatgc 3961 agtttgtccc atcggtttgt ccatcccagt tgaaaaacct gttgcaacaa atgtctcaat 4021 tttatgttct taacagttca tccgttttac tagttatatt catttctttc tcctgtcaac 4081 tgttggattg catttggcag aggatcatcg gccacattta ctcgttgttc tgtgagatat 4141 gaatgtagta gtactgtttg cccaaacctt cggtgaaatt acggaacagt gacaaccgtt 4201 ggattgcaca tttgattact acagtgccta caggtccctg gttgtatagt acgctcgtat 4261 ttgctcattt acgtgccgtt tttggaaaca tgtccttgaa ggtgaaatgg atgcactgct 4321 cctactgtcc tggggccgca ctatcttgga gcaggccaga ttgtctgttc agacagttct 4381 gtaaaatggc acgccagaaa aaacaattaa actcgggtta ttaatgcctt cttttagagg 4441 gagatggtta attggtgatc agggcatgtg caggctgtgc gtttgctggc cgggggccgt 4501 gcgtttgcgc ggacgtgcca gctccgtttc tcccacatgc ccgtgggagc tgggagctga 4561 cgtgtctgcc cagtacgtgt ttcaatttaa ttttcaaaat ttccattcaa aattcaaaac 4621 acttaactta aatttagaaa actttcaaca taattttcaa aacttccatt caaaattcaa 4681 aacacttaac ttaaatttag aaaactttca acataaaatt caaagcttga attaatcttg 4741 accttaaagt tttcaaatat taacttaaaa gttttcaatt gtaagttaaa agttttaaat 4801 ttgagtcaaa agttttcaaa ttgagtcgag cttttaaatt cgatttaaaa aattttcaaa 4861 tctaagttga aagtttttaa atttgaatat aaaactttca aatcttaagt caaaagtttt 4921 caaaatttcg tcatccacca tcgagctcct ctattcctcc ccgtggtcgc cggtaagctc 4981 atccccgtgg tcatggtgcc //