LOCUS BN000835 2985 bp mRNA linear PLN 01-MAY-2007 DEFINITION TPA: Oryza sativa (japonica cultivar-group) mRNA for putative cation chloride cotransporter 2 (ccc2 gene). ACCESSION BN000835 VERSION BN000835.1 KEYWORDS cation chloride cotransporter 2; ccc2 gene; Os01g19850 gene; Third Party Data; TPA; TPA:inferential. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2985) AUTHORS Colmenero-Flores J.M. JOURNAL Submitted (20-OCT-2005) to the INSDC. Colmenero-Flores J.M., Genomics, Instituto Investigaciones Agrarias, IVIA, Apartado Oficial, Moncada, Valencia, 46113, SPAIN. REFERENCE 2 AUTHORS Colmenero-Flores J.M., Martinez G., Gamba G., Vazquez N., Iglesias D.J., Brumos J., Talon M. TITLE Identification and functional characterization of cation-chloride cotransporters in plants JOURNAL Plant J. 50(2), 278-292(2007). PUBMED 17355435 PRIMARY TPA_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-173 AP008207.1 11264094-11264266 c 174-320 AP008207.1 11262283-11262429 c 321-399 AP008207.1 11262074-11262152 c 400-491 AP008207.1 11258384-11258475 c 492-606 AP008207.1 11257766-11257880 c 607-707 AP008207.1 11257434-11257534 c 708-769 AP008207.1 11256831-11256892 c 770-1018 AP008207.1 11255713-11255961 c 1019-1133 AP008207.1 11255511-11255625 c 1134-1328 AP008207.1 11255195-11255389 c 1329-1729 AP008207.1 11253977-11254377 c 1730-1891 AP008207.1 11253398-11253559 c 1892-2985 AP008207.1 11252220-11253313 c FEATURES Location/Qualifiers source 1..2985 /organism="Oryza sativa Japonica Group" /chromosome="1" /mol_type="mRNA" /db_xref="taxon:39947" CDS 1..2985 /gene="ccc2" /gene_synonym="Os01g19850" /product="putative cation chloride cotransporter 2" /db_xref="GOA:Q657W3" /db_xref="InterPro:IPR004841" /db_xref="InterPro:IPR018491" /db_xref="UniProtKB/Swiss-Prot:Q657W3" /protein_id="CAJ40614.1" /translation="MERGGFGGAGRHDEEAPAMRPAPQQRYRTVESHDRAVVQMAPME FGSSADASASAGPRYIKPGTNLRTDARMHMASSNGRSSNGSQGDSKLELFGFDSLVNI LGLKRMVGEQAQASASTRDGENAGIAIGHPKETETKLDTMMGVFVPCLQNILGIIYYI RFTWIVGMGGVWQSLVLVAFCGSCTFLTTISLSAIATNGAMKGGGPYYLIGRALGPEV GVSIGLCFFLGNAVAGAMYVLGAVETFLDAVPSAEFFQESVTVVTNTFVNGTAAGNAT TISTPNLHDLQVYGIIVTILLCFIVFGGVKIINKVAPAFLIPVLFSILCIYIGVFIAP RPNASKWITGLSITTLKDNWSSDYQRTNNAGVPDPNGSIYWDFNALLGLYFPAVTGIM AGSNRSASLKDTQRSIPIGTLHATISTTMMYLLSVFLFGALSTREGLLTDRLLCAAVA WPSPAVVYAGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKAYEGSEPHVATL FTSFICISCVIIGNLDVITPTITMFFLLCYAGVNLSCFLLDLLDAPSWRPRWKLHHWS LSLIGALLCIVIMFMISWTFTVVSLALASLIYYYVSLKGKAGDWGDGFKSAYFQLALR SLRSMGANQVHPKNWYPIPLIFCRPWGKLPEDVPCHPKLADFANCMKKKGRGMSIFVS IIDGDYHESAEDAKTACRQLSAYIDYRRCEGVAEIIVAPSTSIGFRSIVQTMGLGNLK PNIVVMRYPEIWRRENLTQIPSTFVSIINDCITANKAVVIVKGLDEWPNEYQRQYGTI DLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDTEAEELKADVKKFLYDLRM QADVIVVTVKSWEADPDRSGGSKKDDPEVYRSAQSRIRTYISQLKEAAERERRPLMEG GKQVVVDEQKVEKFLYTMLKLNATILRHSRMAVVVLVSLPPPPLNHLAYCYMEYMDLL VENIPRILIVRGYRRDVVTLFT" BASE COUNT 752 a 663 c 749 g 821 t ORIGIN 1 atggagagag ggggattcgg cggggccggc cgccatgacg aggaggcccc ggcgatgagg 61 ccggcgccgc agcagcggta ccgcacggtg gagtcgcacg accgcgccgt cgtccagatg 121 gcgcccatgg agttcggatc ttccgccgat gcctccgcct ccgcagggcc caggtacatc 181 aagcctggaa ctaacctacg cactgatgca agaatgcata tggcttcttc taatgggcgt 241 agctctaatg gatctcaagg cgattcaaaa cttgagctgt ttggttttga ctctctggtc 301 aatattttgg gacttaagag aatggtaggc gaacaagctc aggcatctgc tagtactagg 361 gatggagaaa atgcagggat tgccattgga caccccaagg aaactgaaac taaacttgat 421 accatgatgg gtgtattcgt gccatgcctg cagaacatct tgggaataat ctattatatt 481 cgctttactt ggatcgttgg tatgggaggc gtatggcagt cacttgtttt agtcgcattt 541 tgtggttcat gcacattttt aactacgata tcattaagtg caattgcgac gaatggggcg 601 atgaagggtg gtggccctta ctatctcatt ggcagggcac ttggtccgga agttggagtt 661 agtattggat tgtgtttctt ccttgggaat gcagttgccg gagctatgta tgtgctggga 721 gctgtcgaaa cctttttgga tgctgttcct tctgctgaat tttttcaaga gagtgtaaca 781 gtggtcacca atacgttcgt aaacggtacc gcagcaggca atgcaacaac tatctcaaca 841 cccaacttgc atgacctcca ggtctacggc atcatcgtga ccatattgct ttgttttatt 901 gtatttggtg gcgtcaaaat tatcaacaaa gttgcacctg ctttcttaat accagtgctc 961 ttctcaatcc tgtgcattta catcggtgtc tttattgcac caaggccaaa tgcttcaaag 1021 tggataactg gtttgagtat aactacattg aaagacaact ggagttcaga ctaccaacga 1081 acaaacaatg ctggagttcc tgatccaaat gggtctatat attgggattt taatgctttg 1141 ttaggtctct acttcccagc agttacagga atcatggctg gttcaaatcg gtctgcttca 1201 ctgaaagaca cacaacgttc aataccaatt ggaacattac atgctaccat ttcaactact 1261 atgatgtatc tactatctgt gtttctgttc ggagcattgt ctacaagaga ggggcttctg 1321 actgacaggc ttctatgtgc tgcagttgct tggccctctc cagcagtagt ttatgctggt 1381 ataattctat ccactttagg tgcagcgcta cagagtctga caggggctcc aaggttactt 1441 gcagcaatag cgaatgatga cattcttcct gtacttaatt attttaaggc ttatgaaggg 1501 tctgaacctc atgtggcaac tctgtttaca agcttcatct gtattagctg tgtcatcatt 1561 gggaacttgg atgtaattac acccactatc accatgtttt tccttctgtg ttatgctggt 1621 gtgaacttgt catgctttct gcttgacctc cttgatgctc ctagttggcg cccccgatgg 1681 aagttgcacc actggagcct ttctctcatc ggtgcattgc tttgtattgt tatcatgttt 1741 atgatctctt ggacttttac tgtggtctcc cttgcccttg caagcctcat atactactat 1801 gtcagcttaa aaggaaaggc aggggactgg ggggacggat ttaagagtgc atactttcaa 1861 ctggctctaa gaagtcttcg atcaatggga gcaaatcaag ttcatcctaa gaattggtac 1921 cctattcctc tcatattttg tcggccttgg ggtaaacttc cagaagatgt cccgtgccat 1981 ccaaaactcg cggattttgc caactgcatg aagaaaaagg gccgtggtat gtcaatattt 2041 gtctcaatta ttgatggcga ctatcatgaa tctgctgagg atgcaaagac agcatgccgc 2101 caactgagcg cttatattga ctataggcgc tgtgagggcg ttgcagagat tatcgtagca 2161 ccctcaacat ctatcggttt tcgcagcatt gttcagacaa tgggcctagg gaatttgaaa 2221 ccaaacattg ttgtgatgcg gtacccagaa atctggcgtc gtgagaatct gacacagata 2281 ccatcaacat ttgtcagcat cataaacgat tgcattactg ctaacaaggc tgtcgtcatt 2341 gtgaaaggac tagatgaatg gcctaatgag taccaacgac agtacgggac aatcgaccta 2401 tactggattg tgagggatgg aggattgatg ctccttctgt ctcagctcct actcaccaaa 2461 gaaagcttcg agagctgcaa gattcaggtc ttctgcatag ctgaagaaga taccgaggcc 2521 gaggagctaa aggcagacgt caaaaagttc ttgtacgatc ttaggatgca agctgatgtg 2581 atcgttgtga ctgtgaagtc atgggaagca gacccagatc gcagcggtgg ctcgaagaag 2641 gatgaccctg aggtgtacag aagcgcgcag agcagaatca gaacatacat ttctcagctg 2701 aaggaagccg cggaacgcga acgccggccc ctgatggagg gtggcaagca ggtcgtggtt 2761 gatgaacaga aggttgaaaa gttcctctac acgatgctga agctgaacgc tactatcctt 2821 aggcactcca ggatggcagt cgtggtgctc gtgagccttc caccgccacc actgaaccac 2881 ctggcatact gctacatgga gtacatggat ctgcttgtag agaacatccc gaggatcctg 2941 atagttaggg gatacagaag agatgtcgtc acgcttttca catga //